Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13950 292 / 4e-103 EIF5A, ATELF5A-1, EIF-5A eukaryotic elongation factor 5A-1 (.1) AT1G69410 284 / 5e-100 ATELF5A-3 eukaryotic elongation factor 5A-3 (.1) AT1G26630 259 / 3e-90 ATELF5A-2, FBR12 FUMONISIN B1-RESISTANT12, EUKARYOTIC ELONGATION FACTOR 5A-2, Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein (.1), Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036801 [exp] 326 / 2e-116 AT1G13950 292 / 5e-103 eukaryotic elongation factor 5A-1 (.1) Lus10030422 [exp] 314 / 1e-111 AT1G13950 295 / 3e-104 eukaryotic elongation factor 5A-1 (.1) Lus10026637 [exp] 313 / 1e-111 AT1G13950 295 / 4e-104 eukaryotic elongation factor 5A-1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G092000 [exp] 305 / 4e-108 AT1G13950 292 / 5e-103 eukaryotic elongation factor 5A-1 (.1) Potri.006G185000 [exp] 304 / 5e-108 AT1G13950 291 / 6e-103 eukaryotic elongation factor 5A-1 (.1) Potri.018G107300 [exp] 304 / 7e-108 AT1G13950 290 / 4e-102 eukaryotic elongation factor 5A-1 (.1) Potri.010G162800 [exp] 299 / 5e-106 AT1G13950 286 / 7e-101 eukaryotic elongation factor 5A-1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0107 [flax] [poplar] KOW PF00467 [flax] [poplar] KOW KOW motif CL0021 [flax] [poplar] OB PF01287 [flax] [poplar] eIF-5a Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold
Representative CDS sequence Show only first row Show all	>Lus10037129 pacid=23152297 polypeptide=Lus10037129 locus=Lus10037129.g ID=Lus10037129.BGIv1.0 annot-version=v1.0 ATGTCGGACGAGGAGCATCAGTTCGAGTCCAAGGCTGACGCCGGAGCCTCCAAGACTTACCCCCAGCAGGCTGGTACCATCCGTAAGAACGGATACATCG TCATCAAGGGCCGCCCTTGCAAGGTCGTTGAAGTTTCCACTTCCAAGACTGGCAAGCACGGTCATGCTAAGTGCCACTTTGTTGCCATTGATATCTTCAA TGGGAAGAAGCTTGAGGATATTGTTCCCTCTTCCCACAATTGTGATGTTCCACATGTGAACCGTACTGATTACCAGCTCATTGACATCTCTGAGGATGGC TTTGTGAGTCTGCTCACTGACAATGGTAACACCAAGGATGATCTGAAGCTCCCAACTGATGAGGCTCTCCTCGCTCTGATCAAGGACGGATTTGCTGAGG GTAAAGACCTTGTGGTGAGTGTGATGTCTGCAATGGGAGAGGAGCAGATCAATGCTCTCAAGGATATCGGCCCCAAGTAA
AA sequence Show only first row Show all	>Lus10037129 pacid=23152297 polypeptide=Lus10037129 locus=Lus10037129.g ID=Lus10037129.BGIv1.0 annot-version=v1.0 MSDEEHQFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDG FVSLLTDNGNTKDDLKLPTDEALLALIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13950		EIF5A, ATELF5A-...	eukaryotic elongation factor 5...		Lus10037129 [exp]	0	1
AT4G35260		IDH-I, IDH1	isocitrate dehydrogenase I, is...		Lus10028374 [exp]	4.5	0.8885
AT4G29870			Oligosaccharyltransferase comp...		Lus10035623 [exp]	5.0	0.9068
AT5G19570			unknown protein		Lus10012977 [exp]	5.7	0.8783
AT1G61790			Oligosaccharyltransferase comp...		Lus10007647 [exp]	8.2	0.8996
AT2G27260			Late embryogenesis abundant (L...		Lus10034173 [exp]	8.7	0.8959
AT5G65270		AtRABA4a	RAB GTPase homolog A4A (.1)		Lus10000637 [exp]	16.5	0.8675
AT2G20820			unknown protein		Lus10031625 [exp]	18.0	0.8952
AT4G22550			Phosphatidic acid phosphatase ...		Lus10004345 [exp]	18.4	0.8652
AT2G32380			Transmembrane protein 97, pred...		Lus10027174 [exp]	18.7	0.8849
AT5G43330		c-NAD-MDH2	cytosolic-NAD-dependent malate...		Lus10021870 [exp]	19.4	0.8817

Compare expression of checked genes

Lus10037129 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.