Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043216 [exp] 44 / 1e-05 AT4G13270 228 / 8e-76 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10011095 [exp] 43 / 3e-05 AT4G13270 234 / 3e-78 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037130 pacid=23152439 polypeptide=Lus10037130 locus=Lus10037130.g ID=Lus10037130.BGIv1.0 annot-version=v1.0 ATGTCTTCTCCCTTCTCCTTCCGCCAACGAAGGCTTCCTCCCTCTCCCGCAAACGACGACGGACGGGGGATAGGTAGTCTGGGTTCGTGGTCAGTTAGAC TCCCCCCCTCTTTTCAGAGATTTCGAGACTCAGAGTTCGATCAGAGATCCAGATGGTTCGTCCAGCACCCAGCACCCAGACATTCACCATCGACGATCTT CAAGGCTTCCCCTCTTTCTTGCCCTTGCTTCCTTGCTTATCTCCGCTCTTCTCTTCAACTACCTAGTTTGTTTGTGAAGGGAAGTTCACTAAATTTCACA CGGTTTAATGCACTGCTGATTCACACTGTTTGCACTGGGGAAAGTATCATCCGAAGTTTATTTGAGCACAAACAACCAGATAGTCGTCCGTCAGAATTGC TACCCTCTGCTATTGAGTGTGTACCTCCTAAGTTTAATATGCTCATTCCTTTCTGGCAGGTTATGAGAGACCAATTGAATCAACTTACCGGTTCAGGTAA ATAG
AA sequence Show only first row Show all	>Lus10037130 pacid=23152439 polypeptide=Lus10037130 locus=Lus10037130.g ID=Lus10037130.BGIv1.0 annot-version=v1.0 MSSPFSFRQRRLPPSPANDDGRGIGSLGSWSVRLPPSFQRFRDSEFDQRSRWFVQHPAPRHSPSTIFKASPLSCPCFLAYLRSSLQLPSLFVKGSSLNFT RFNALLIHTVCTGESIIRSLFEHKQPDSRPSELLPSAIECVPPKFNMLIPFWQVMRDQLNQLTGSGK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10037130 [exp]	0	1
AT4G32180		ATPANK2	pantothenate kinase 2 (.1.2.3)		Lus10029146 [exp]	10.0	0.9011
AT2G24100		ASG1	ALTERED SEED GERMINATION 1, un...		Lus10041622 [exp]	15.5	0.8855
AT4G35090		CAT2	catalase 2 (.1.2)		Lus10013225 [exp]	15.7	0.8755
AT1G13960	WRKY	WRKY4	WRKY DNA-binding protein 4 (.1...		Lus10026634 [exp]	18.7	0.8789
AT5G66850		MAPKKK5	mitogen-activated protein kina...		Lus10009339 [exp]	24.2	0.8360
AT3G51000			alpha/beta-Hydrolases superfam...		Lus10041790 [exp]	25.1	0.8719
AT4G31150			endonuclease V family protein ...		Lus10000685 [exp]	26.1	0.8606
AT5G57700			BNR/Asp-box repeat family prot...		Lus10008903 [exp]	28.2	0.8899
AT3G04970			DHHC-type zinc finger family p...		Lus10033823 [exp]	29.7	0.8954
AT2G24100		ASG1	ALTERED SEED GERMINATION 1, un...		Lus10024097 [exp]	38.1	0.8732

Compare expression of checked genes

Lus10037130 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.