Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03340 371 / 1e-124 WRKY WRKY3 WRKY DNA-binding protein 3 (.1) AT1G13960 365 / 1e-122 WRKY WRKY4 WRKY DNA-binding protein 4 (.1.2) AT3G01080 262 / 2e-83 WRKY ATWRKY58, WRKY58 WRKY DNA-binding protein 58 (.1) AT4G26440 249 / 1e-76 WRKY ATWRKY34, MSP3, WRKY34 MICROSPORE-SPECIFIC PROMOTER 3, WRKY DNA-binding protein 34 (.1) AT4G26640 243 / 3e-75 WRKY ATWRKY20, WRKY20 WRKY family transcription factor family protein (.1.2) AT5G07100 237 / 4e-75 WRKY WRKY26 WRKY DNA-binding protein 26 (.1.2) AT2G38470 239 / 2e-73 WRKY ATWRKY33, WRKY33 WRKY DNA-binding protein 33 (.1) AT2G30250 205 / 1e-61 WRKY ATWRKY25, WRKY25 WRKY DNA-binding protein 25 (.1) AT2G37260 195 / 2e-58 WRKY DSL1, ATWRKY44, TTG2 TRANSPARENT TESTA GLABRA 2, DR. STRANGELOVE 1, WRKY family transcription factor family protein (.1.2) AT2G04880 193 / 1e-56 WRKY ATWRKY1, ZAP1 zinc-dependent activator protein-1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036800 [exp] 668 / 0 AT2G03340 405 / 4e-138 WRKY DNA-binding protein 3 (.1) Lus10000173 [exp] 553 / 0 AT2G03340 366 / 2e-124 WRKY DNA-binding protein 3 (.1) Lus10030424 [exp] 451 / 1e-156 AT1G13960 421 / 7e-144 WRKY DNA-binding protein 4 (.1.2) Lus10026634 [exp] 423 / 3e-146 AT1G13960 409 / 1e-139 WRKY DNA-binding protein 4 (.1.2) Lus10015377 [exp] 332 / 6e-109 AT2G03340 417 / 3e-141 WRKY DNA-binding protein 3 (.1) Lus10033000 [exp] 277 / 5e-88 AT2G03340 367 / 1e-121 WRKY DNA-binding protein 3 (.1) Lus10016595 [exp] 261 / 1e-81 AT4G26640 556 / 0.0 WRKY family transcription factor family protein (.1.2) Lus10001265 [exp] 249 / 2e-77 AT2G38470 394 / 2e-132 WRKY DNA-binding protein 33 (.1) Lus10012215 [exp] 249 / 7e-77 AT2G38470 393 / 2e-131 WRKY DNA-binding protein 33 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G163000 [exp] 392 / 3e-133 AT1G13960 431 / 5e-147 WRKY DNA-binding protein 4 (.1.2) Potri.008G091900 [exp] 374 / 3e-126 AT2G03340 407 / 7e-138 WRKY DNA-binding protein 3 (.1) Potri.004G120800 [exp] 321 / 7e-105 AT2G03340 358 / 5e-118 WRKY DNA-binding protein 3 (.1) Potri.011G169300 [exp] 259 / 2e-79 AT5G56270 588 / 0.0 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Potri.016G128300 [exp] 252 / 9e-78 AT2G38470 377 / 8e-125 WRKY DNA-binding protein 33 (.1) Potri.013G153400 [exp] 249 / 1e-76 AT2G38470 329 / 5e-106 WRKY DNA-binding protein 33 (.1) Potri.011G087900 [exp] 246 / 7e-76 AT4G26640 555 / 0.0 WRKY family transcription factor family protein (.1.2) Potri.001G361600 [exp] 246 / 9e-76 AT4G26640 540 / 0.0 WRKY family transcription factor family protein (.1.2) Potri.019G123500 [exp] 240 / 6e-73 AT2G38470 299 / 3e-94 WRKY DNA-binding protein 33 (.1) Potri.017G088300 [exp] 234 / 2e-71 AT1G13960 286 / 9e-90 WRKY DNA-binding protein 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10037131 pacid=23152333 polypeptide=Lus10037131 locus=Lus10037131.g ID=Lus10037131.BGIv1.0 annot-version=v1.0 ATGGCGGAAAATGAAGGCCGGCGACGAGGACCAGCTGCTCCAGCGGCGGCGGAGAGAACAACTGTCGTCTCGTCTTCCCGCCCCACCACCATCGCCCTTC CTCCTCGCTCCTTCGGCGGCGACAGCACGATGTTTAGCGGTGGTGGGTTCGCGTTCAGCCCGGGTCCGATGAGTCTGGTTTCCAGCTTCTTCTCCGACGG CGAGGACAACAAGTCGTTCTCCCAGCTTCTCGCCGGTGTTATGTCTCCAGCGGAGGTGCCTTCTACCAAGGGAGAGAAAGGGTCGGCGAATTTGTCGGTT GCGCCGGCTCTGCCGGCGGCGTCGATGTTTATGGTTCCGCCGGCGATTTGTCCGGCGATGCTGCTTGAATCTCCGGAATTCCGAATGTTCTCTTCTCAGG AAACTTATGGAGTGAGCAATCAGCAGGCCTTAGCTCGGGTACCAGCACCGGCACTTCCACATCGCGAAACAACGAAAGACAACTACTTCGAACCGACAAA GATGGTGACTTATCCCGATCAAGGGCACCAATCCTCGTCATTCATCATAGTTGACAAGCCAGCTGACGACGGGTACAAGTGGAGGAAATATGGGCAGAAA CAGGTGAAAGGCAGTGAGTTCCCCAGGAGTTACTACAAATGCACACACCCGAAATGCCCCGTGACGAAAAAGGTTGAGAGGTCCCTTAAAGGACAAGTAA CTGAGATCATATATAAAGGGCAGCATAACCATCAGCCTCCACAGTCCAACAAACGCGGTAAGGATCAGGCGAGTAATGTCGAGTTGGGTTCGCAGTTTCG TGATTCGAAGGAGTCTAGTCAAGCCACAGCAGACCATTTGTCCGCGAGTAGTGACAGTGATGCCGAGACTGCCAATTATGAAGCCGACGAGCCTGATGCC AAACGAAGAAATATTGAGGTTAGGGTAACTGAGTCAACTTCATCACATAGAACTGTCACAGAACCGAGGATCATCGTGCAGACAACAAGCGAAGTCGATC TCCTTGACGATGGATACAGATGGCGAAAGTACGGGCAGAAAGTCGTTAAAGGCAATCCTTATCCAAGGAGCTACTACAAATGCACAACTCAAGGTTGCAA CGTACGAAAACATGTCGAGAGGGCCGCAACGGATCCAAAAGCGGTTATAACAACGTACAAGGGAAAACACAACCATGACGTCCCAGCTTCCAAGAACAGC AGCCACAATACTGCTAACGGTAGTCTCGACAGGATTTCCACGCAGCAACCTATAGTGCAGCTGCGGTTGAAAGAAGAACGGATAATATGA
AA sequence Show only first row Show all	>Lus10037131 pacid=23152333 polypeptide=Lus10037131 locus=Lus10037131.g ID=Lus10037131.BGIv1.0 annot-version=v1.0 MAENEGRRRGPAAPAAAERTTVVSSSRPTTIALPPRSFGGDSTMFSGGGFAFSPGPMSLVSSFFSDGEDNKSFSQLLAGVMSPAEVPSTKGEKGSANLSV APALPAASMFMVPPAICPAMLLESPEFRMFSSQETYGVSNQQALARVPAPALPHRETTKDNYFEPTKMVTYPDQGHQSSSFIIVDKPADDGYKWRKYGQK QVKGSEFPRSYYKCTHPKCPVTKKVERSLKGQVTEIIYKGQHNHQPPQSNKRGKDQASNVELGSQFRDSKESSQATADHLSASSDSDAETANYEADEPDA KRRNIEVRVTESTSSHRTVTEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTQGCNVRKHVERAATDPKAVITTYKGKHNHDVPASKNS SHNTANGSLDRISTQQPIVQLRLKEERII

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03340	WRKY	WRKY3	WRKY DNA-binding protein 3 (.1...		Lus10037131 [exp]	0	1
AT1G27840		ATCSA-1	Transducin/WD40 repeat-like su...		Lus10018680 [exp]	1.4	0.9327
AT1G06840			Leucine-rich repeat protein ki...		Lus10019114 [exp]	9.8	0.9347
AT1G10140			Uncharacterised conserved prot...		Lus10007729 [exp]	12.5	0.9089
AT2G26230			uricase / urate oxidase / nodu...		Lus10008952 [exp]	15.0	0.9169
AT3G59310			Eukaryotic protein of unknown ...		Lus10003247 [exp]	15.9	0.9118
AT5G36930			Disease resistance protein (TI...		Lus10037406 [exp]	16.4	0.8836
AT2G03340	WRKY	WRKY3	WRKY DNA-binding protein 3 (.1...		Lus10036800 [exp]	16.9	0.9285
AT4G30360		ATCNGC17	cyclic nucleotide-gated channe...		Lus10015510 [exp]	17.0	0.8482
AT4G16760		ATACX1, ACX1	acyl-CoA oxidase 1 (.1.2)		Lus10004386 [exp]	17.1	0.9229
AT1G11340			S-locus lectin protein kinase ...		Lus10041679 [exp]	19.8	0.9171

Compare expression of checked genes

Lus10037131 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.