Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13970 470 / 8e-163 Protein of unknown function (DUF1336) (.1) AT3G29180 425 / 3e-145 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2) AT5G39430 409 / 7e-139 Protein of unknown function (DUF1336) (.1) AT1G59650 327 / 3e-107 CW14 Protein of unknown function (DUF1336) (.1) AT1G10410 316 / 6e-103 Protein of unknown function (DUF1336) (.1) AT5G25010 57 / 1e-08 Protein of unknown function (DUF1336) (.1) AT3G54800 50 / 3e-06 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1), Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026633 [exp] 720 / 0 AT1G13970 504 / 4e-176 Protein of unknown function (DUF1336) (.1) Lus10030425 [exp] 713 / 0 AT1G13970 499 / 2e-174 Protein of unknown function (DUF1336) (.1) Lus10036799 [exp] 304 / 1e-100 AT1G13970 181 / 7e-53 Protein of unknown function (DUF1336) (.1) Lus10036683 [exp] 309 / 6e-100 AT1G59650 603 / 0.0 Protein of unknown function (DUF1336) (.1) Lus10039463 [exp] 304 / 1e-97 AT1G59650 478 / 3e-165 Protein of unknown function (DUF1336) (.1) Lus10005831 [exp] 303 / 2e-97 AT1G59650 471 / 1e-162 Protein of unknown function (DUF1336) (.1) Lus10010740 [exp] 299 / 3e-96 AT1G59650 610 / 0.0 Protein of unknown function (DUF1336) (.1) Lus10000174 [exp] 268 / 5e-89 AT1G13970 224 / 2e-72 Protein of unknown function (DUF1336) (.1) Lus10019591 [exp] 63 / 3e-10 AT5G35180 931 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G163100 [exp] 540 / 0 AT1G13970 543 / 0.0 Protein of unknown function (DUF1336) (.1) Potri.017G088000 [exp] 418 / 5e-142 AT3G29180 615 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2) Potri.008G190500 [exp] 323 / 9e-105 AT1G59650 579 / 0.0 Protein of unknown function (DUF1336) (.1) Potri.017G074800 [exp] 319 / 3e-104 AT1G59650 472 / 6e-164 Protein of unknown function (DUF1336) (.1) Potri.010G040100 [exp] 309 / 2e-99 AT1G59650 598 / 0.0 Protein of unknown function (DUF1336) (.1) Potri.018G113100 [exp] 49 / 7e-06 AT5G35180 1028 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07059 [flax] [poplar] DUF1336 Protein of unknown function (DUF1336)
Representative CDS sequence Show only first row Show all	>Lus10037132 pacid=23152545 polypeptide=Lus10037132 locus=Lus10037132.g ID=Lus10037132.BGIv1.0 annot-version=v1.0 ATGGGGGGATGCGTTTCATCATCAGCTCATCGCAAAGTGAGGCCGGAAGGAGGGAAGAGCAAGATCAGGAGGAGATTCTCGCGGCGAACGGCCAAGATCT CGAGCACGATGTCCGACATACAAATGCCGATGAAGAGTCTAGGCAGCGATTCTGCGTTGAACGAGCTTGTCCGTCGTCTAAGTTTCGACGGTGGTTGCAG GATGTCCGAGGTTTCGAACAAAAACTTCCATGTCACTCAGATGCAGTGGAACCAATGCCACATCGATCAAAATGGGATCAGCCAGGAAGAAGTGTGGTTC GATTCTGTTAGCTTCATCGAGTCTGATTTAGAAGACGACTTTATTAGCATGCAAGCAGAAGGTTTGTCAGGGTTTACAAACGCAATAGGTCACATGCCGA ATGCACAACTGCTTCAAGTTGCATCAGGTTTCACGAACAACAAATGCAATGCATACGAGGAGTTCTACGAGAGCTACGTAGGTGAAGATTTCGGAGGAGA GAAGAGGAAATCCACTGTAATTCGTGTCGCCCTTATGAGGAAATCTGTCGATGGAGAGGCTGTCACTAAAGCTAATTTAAGTTCGGGAGGTGAGAAAACC TGTTACAAGCCAAAAGCAGGGCATCTAATCACAAGAGAAGAGAAACCGATTGCCGGAACATGGTCCGAGATTTCGCCTTCGGTTTTCAAGCTTCGCGGAG AGAGTTACTTCAGTAACAAGCAGAAACAGGCGGCTCCGGACATAAGCCCATATGTCGCCATTGGAGTGGATCTTTTCATGTGCCAGAGAAAGATCAGCCA CATTGCCCAACACCTTGACCTTCCTCAGGTCAACCCTCATGACAAAGTTCCATCTCTCTTGATAGTTAACATCCAGATCCCAACCTACCCGGTCGCAATG TTCCATGGAGACTGCGACGGAGAAGGCATGAGCCTCGTCCTGTACTTCAAGCTCTGCGACGACTTCGACACTCGAGTCTCCCCTCATTTCCAGGAAACCC TCAGGAAATTTGTGGAGGATGAGATGGAGAAAGTCAAGGGCTTTACCAAAGAGTCAACAGTTCCATTCAGGGAAAGGCTGAAGCTTGTGGTGGGACTAGC GAATCCTGAGGATCTCAACTTGAGCTCGACGGAGAAGAAGCTGATCCATGCTTACAACGAGAAGCCCGTGCTTTCGCGGCCTCAACACCAGTTCTTCAGC GGTCCGAATTACTTGGAAATCGACCTGGACATTCACCGGTTCAGCTACATTTCGAGGAAGGGGCTCGAATCTTTTAGGGACAGGTTGAAGCTCGGGATTG CAAATGTTGGCTTGACAATTCAGGCACAGAAGCCTGAAGAATTGCCGGAGCAAGCACTGTGCTGTTTGAGGTTGAACAAGATCGATTTGGTGAATCGCGG CCAGATTCCTACCCTTGTAACCCAGGATGATTGA
AA sequence Show only first row Show all	>Lus10037132 pacid=23152545 polypeptide=Lus10037132 locus=Lus10037132.g ID=Lus10037132.BGIv1.0 annot-version=v1.0 MGGCVSSSAHRKVRPEGGKSKIRRRFSRRTAKISSTMSDIQMPMKSLGSDSALNELVRRLSFDGGCRMSEVSNKNFHVTQMQWNQCHIDQNGISQEEVWF DSVSFIESDLEDDFISMQAEGLSGFTNAIGHMPNAQLLQVASGFTNNKCNAYEEFYESYVGEDFGGEKRKSTVIRVALMRKSVDGEAVTKANLSSGGEKT CYKPKAGHLITREEKPIAGTWSEISPSVFKLRGESYFSNKQKQAAPDISPYVAIGVDLFMCQRKISHIAQHLDLPQVNPHDKVPSLLIVNIQIPTYPVAM FHGDCDGEGMSLVLYFKLCDDFDTRVSPHFQETLRKFVEDEMEKVKGFTKESTVPFRERLKLVVGLANPEDLNLSSTEKKLIHAYNEKPVLSRPQHQFFS GPNYLEIDLDIHRFSYISRKGLESFRDRLKLGIANVGLTIQAQKPEELPEQALCCLRLNKIDLVNRGQIPTLVTQDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G29180			Protein of unknown function (D...		Lus10037132 [exp]	0	1
					Lus10019251 [exp]	2.6	0.7758
AT4G00440			Protein of unknown function (D...		Lus10036356 [exp]	3.5	0.7834
AT1G59610		DRP2B, CF1, ADL...	Dynamin related protein 2B, dy...		Lus10007434 [exp]	4.4	0.8105
AT2G28250		NCRK	Protein kinase superfamily pro...		Lus10021460 [exp]	6.9	0.7954
AT5G18860		NSH3	nucleoside hydrolase 3, inosin...		Lus10041248 [exp]	11.1	0.8031
AT1G20550			O-fucosyltransferase family pr...		Lus10014444 [exp]	14.8	0.7832
AT2G28550	AP2_ERF	TOE1, RAP2.7	TARGET OF EARLY ACTIVATION TAG...		Lus10001979 [exp]	17.7	0.7645
AT5G66310			ATP binding microtubule motor ...		Lus10014268 [exp]	23.6	0.7788
AT3G10360		APUM4	pumilio 4 (.1)		Lus10038706 [exp]	25.1	0.7044
AT3G51150			ATP binding microtubule motor ...		Lus10025969 [exp]	27.2	0.7602

Compare expression of checked genes

Lus10037132 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.