Plant FIBer expression Database

Lus10037134 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G11810 144 / 6e-42 unknown protein
AT2G03330 132 / 4e-37 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036797
[exp]
287 / 4e-98 AT3G11810 212 / 2e-66 unknown protein
Lus10030427
[exp]
86 / 5e-20 AT3G11810 114 / 3e-29 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G091600
[exp]
135 / 1e-38 AT3G11810 235 / 3e-75 unknown protein
Potri.010G163300
[exp]
122 / 2e-33 AT3G11810 234 / 1e-74 unknown protein
PFAM info
Representative CDS sequence
>Lus10037134 pacid=23152277 polypeptide=Lus10037134 locus=Lus10037134.g ID=Lus10037134.BGIv1.0 annot-version=v1.0
ATGGTCTCCTTAATAACTCTCCTCTTCATCTGCTCCTTGTACTTCGTCACCAAGGGATTAAACTTGCTCGGCCTCGAAATCTATCCAAATTCCTCCTACT
TCATCGCTCTAGCAGTGATCTACTCAGCTCTTTGGCTCATTGTCCTCCTCTACTTCAAAATCAACTGGATACTTAGCTCCGTCGTTGTTGTGGCCGAATC
AAGCTGGGGGATTTTCCCGTTGAAGCGTAGCAGCTACCTGGTTAGAGGAATGCAGAGAGCGGTTTTGTACTTCTTGCTGTCATTTGGGATTCTATCTGGG
GTTCTGACATGGACCAGCTCCATTGCTGCGGCGAAACTGAGCGGCGGCGGCGGTGGTGAGGACGGAGGGTGGAACAGCTGGTTCTTCGTGGCGCAGATTG
TGGTTACGTCGGCTCTGTTGACTCTGCTGCTCCTCTACTTCTTTGCTGCGCAGAGTGTTCTGTACATGTACTGTAAGGCTGTTCGTGGAGAGCTAGCTTC
AGAGATTGTGCAGGAGTTTGCTACTGAGTATGTCTGCTTGCCTTTTGACAATGAGAAGGTGCCTCGTCTCGTTTCTGTTGTCTATACTTGA
AA sequence
>Lus10037134 pacid=23152277 polypeptide=Lus10037134 locus=Lus10037134.g ID=Lus10037134.BGIv1.0 annot-version=v1.0
MVSLITLLFICSLYFVTKGLNLLGLEIYPNSSYFIALAVIYSALWLIVLLYFKINWILSSVVVVAESSWGIFPLKRSSYLVRGMQRAVLYFLLSFGILSG
VLTWTSSIAAAKLSGGGGGEDGGWNSWFFVAQIVVTSALLTLLLLYFFAAQSVLYMYCKAVRGELASEIVQEFATEYVCLPFDNEKVPRLVSVVYT

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G11810 unknown protein Lus10037134
[exp]
0 1
AT3G13050 AtNiaP nicotinate transporter, Major ... Lus10018992
[exp]
1.4 0.9394
AT5G23590 DNAJ heat shock N-terminal dom... Lus10027828
[exp]
2.0 0.9297
AT1G61620 phosphoinositide binding (.1) Lus10018409
[exp]
4.5 0.9212
AT3G11810 unknown protein Lus10036797
[exp]
4.9 0.9122
AT1G12520 ATCCS, CCS1 copper chaperone for SOD1 (.1.... Lus10007031
[exp]
5.1 0.9062
AT3G52220 unknown protein Lus10039101
[exp]
6.0 0.9259
AT5G58380 PKS2, CIPK10, S... SNF1-RELATED PROTEIN KINASE 3.... Lus10008582
[exp]
6.9 0.9106
AT1G22540 Major facilitator superfamily ... Lus10016932
[exp]
11.3 0.9033
AT2G35330 RING/U-box superfamily protein... Lus10004557
[exp]
13.1 0.8857
AT2G32080 PUR ALPHA-1, PU... purin-rich alpha 1 (.1.2) Lus10001781
[exp]
13.6 0.8981

Lus10037134 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.