Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69430 410 / 1e-143 unknown protein AT1G26650 403 / 5e-141 unknown protein AT4G19950 74 / 2e-14 unknown protein AT1G31130 72 / 7e-14 unknown protein AT5G44860 69 / 7e-13 unknown protein AT5G61340 52 / 2e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036796 [exp] 641 / 0 AT1G69430 434 / 4e-153 unknown protein Lus10018322 [exp] 62 / 2e-10 AT4G19950 417 / 3e-147 unknown protein Lus10017130 [exp] 52 / 3e-07 AT4G19950 410 / 1e-144 unknown protein Lus10036220 [exp] 47 / 6e-06 AT5G44860 265 / 3e-89 unknown protein Lus10018940 [exp] 47 / 1e-05 AT1G31130 231 / 8e-74 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G163400 [exp] 463 / 4e-164 AT1G26650 453 / 1e-160 unknown protein Potri.008G091500 [exp] 458 / 4e-162 AT1G26650 401 / 3e-140 unknown protein Potri.006G155900 [exp] 91 / 9e-21 AT1G69430 79 / 2e-16 unknown protein Potri.006G159000 [exp] 91 / 2e-20 AT1G69430 78 / 4e-16 unknown protein Potri.015G125600 [exp] 84 / 4e-18 AT1G31130 327 / 7e-112 unknown protein Potri.007G105700 [exp] 84 / 9e-18 AT4G19950 182 / 4e-55 unknown protein Potri.007G105600 [exp] 83 / 1e-17 AT4G19950 179 / 7e-54 unknown protein Potri.005G186200 [exp] 77 / 2e-15 AT4G19950 185 / 3e-56 unknown protein Potri.012G125800 [exp] 72 / 4e-14 AT5G44860 396 / 4e-139 unknown protein Potri.015G060900 [exp] 65 / 2e-11 AT5G61340 164 / 5e-48 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037135 pacid=23152594 polypeptide=Lus10037135 locus=Lus10037135.g ID=Lus10037135.BGIv1.0 annot-version=v1.0 ATGGGAGAAGGAATTACAGAAATGGAGCTTACTGGGGAAGGCTCATCATCATCAACCCATGTCCACAAGTTTCAGCTGGATCCACCATCATCATCATCAT CATCGTCACCATCATCGCACCAGTTCAACCATCCGATGAACGCACTAGAGATCCTGAGAGAAACGGTACGGATCCTCCGGTTCAACGCCGGTTCGTTCAT GCTCATCGCTACTTTCCTTGTCTGTCCAGTTTCAGCTCTCCTTTTATCCAACGTCTTAGTCGATCAATCCATCGTAAAGCGGCTCACAATCAGATTAATG CTACTCGCAAAGTCCAGCGGCCTCCCATTGAAAAGTTTCATCAAGCATTCATGCCACCGATTCGCCGAGATGGTAGTCTCTTCATCAATCTGCTTCCCTT TCTTCCTCACATTCTCACTATCCTCCAAAACCGCTGTAGTCTACTCCGTCGATTGCACCTATTCAAGAAAAGAAGTCGATTTGACCAAACTACTAGCTAT AATCTGCAGGATCTGGAAGAGAGTTGCTGTAACTTATCTATGGTCATGTACAGTGATTGCCGGATGCGTCACATTGTTCTTTGTACTTCTTCTAGCACTG TGCAGCACATTCTCCGTTTTCGGTCTATGGCCCGATTTGAATCTATACGCTGCTGTCCTGTTGGGGCTTGTGTTCTCGGTAGTGTTTGCGAATTCGATCA TTATATGCAGCATTGCTGTGGTGATATCAGTGCTAGAGGATGTGTCGGGACCGCAGGCTTTGCTAAGATCGAGTGTGTTGATTAGAGGGCAGACTCAGGT CGGACTGCTTATCTATCTCGGGTCCACGATTGGGACGGCCTTTGTGGAAGGTTTGTTTGAACACAGAGTGAAGACGTTGAGCTATGGAGATGGATCTTCG AGAATATGGGAAGGGCCGCTTTTGGTTGTTATGTATTCGTTCGTGGTGCTTGTTGATATGATGATGAGCGCCGTGTTCTACTATAGCTGTAAGTCGTACC GGATGGAGGATGCTGAAGAATGCCAGTCGATTTTGGAGACCATCAGTGTCTCCCCTCTAGGAGGAGAGGTAGATAGTTGA
AA sequence Show only first row Show all	>Lus10037135 pacid=23152594 polypeptide=Lus10037135 locus=Lus10037135.g ID=Lus10037135.BGIv1.0 annot-version=v1.0 MGEGITEMELTGEGSSSSTHVHKFQLDPPSSSSSSSPSSHQFNHPMNALEILRETVRILRFNAGSFMLIATFLVCPVSALLLSNVLVDQSIVKRLTIRLM LLAKSSGLPLKSFIKHSCHRFAEMVVSSSICFPFFLTFSLSSKTAVVYSVDCTYSRKEVDLTKLLAIICRIWKRVAVTYLWSCTVIAGCVTLFFVLLLAL CSTFSVFGLWPDLNLYAAVLLGLVFSVVFANSIIICSIAVVISVLEDVSGPQALLRSSVLIRGQTQVGLLIYLGSTIGTAFVEGLFEHRVKTLSYGDGSS RIWEGPLLVVMYSFVVLVDMMMSAVFYYSCKSYRMEDAEECQSILETISVSPLGGEVDS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69430			unknown protein		Lus10037135 [exp]	0	1
AT4G26455		WIP1	WPP domain interacting protein...		Lus10008336 [exp]	1.0	0.9230
AT2G20810		GAUT10, LGT4	galacturonosyltransferase 10 (...		Lus10018554 [exp]	1.4	0.8953
AT5G54830			DOMON domain-containing protei...		Lus10041448 [exp]	3.9	0.8743
AT5G08160		ATPK3	serine/threonine protein kinas...		Lus10034642 [exp]	6.0	0.8891
AT1G51540			Galactose oxidase/kelch repeat...		Lus10034826 [exp]	8.2	0.8782
AT1G52420			UDP-Glycosyltransferase superf...		Lus10011469 [exp]	8.9	0.8236
AT1G79920		AtHsp70-15	heat shock protein 70-15, Heat...		Lus10011463 [exp]	11.0	0.8703
AT5G57440		GPP2, GS1	GLYCEROL-3-PHOSPHATASE 2, Halo...		Lus10025466 [exp]	14.1	0.8283
AT5G07720			Galactosyl transferase GMA12/M...		Lus10000563 [exp]	14.1	0.8423
AT5G13490		AAC2	ADP/ATP carrier 2 (.1.2)		Lus10016417 [exp]	14.3	0.8272

Compare expression of checked genes

Lus10037135 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.