Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69440 1234 / 0 ZIP, AGO7 ZIPPY, ARGONAUTE7, Argonaute family protein (.1) AT1G48410 618 / 0 AGO1 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) AT5G43810 592 / 0 PNH, ZLL, AGO10 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) AT2G27880 563 / 0 AGO5 ARGONAUTE 5, Argonaute family protein (.1) AT1G31280 528 / 2e-171 AGO2 argonaute 2, Argonaute family protein (.1) AT1G31290 524 / 1e-167 AGO3 ARGONAUTE 3 (.1) AT5G21150 391 / 9e-121 AGO9 ARGONAUTE 9, Argonaute family protein (.1) AT2G27040 383 / 2e-117 OCP11, AGO4 OVEREXPRESSOR OF CATIONIC PEROXIDASE 11, ARGONAUTE 4, Argonaute family protein (.1.2) AT2G32940 337 / 7e-101 AGO6 ARGONAUTE 6, Argonaute family protein (.1) AT5G21030 308 / 3e-90 PAZ domain-containing protein / piwi domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036794 [exp] 1833 / 0 AT1G69440 1251 / 0.0 ZIPPY, ARGONAUTE7, Argonaute family protein (.1) Lus10036795 [exp] 1701 / 0 AT1G69440 1248 / 0.0 ZIPPY, ARGONAUTE7, Argonaute family protein (.1) Lus10041978 [exp] 607 / 0 AT1G48410 1579 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Lus10031331 [exp] 607 / 0 AT1G48410 1621 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Lus10017983 [exp] 601 / 0 AT1G48410 1602 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Lus10006627 [exp] 598 / 0 AT5G43810 1658 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) Lus10039386 [exp] 595 / 0 AT5G43810 1647 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) Lus10040619 [exp] 585 / 0 AT1G31280 923 / 0.0 argonaute 2, Argonaute family protein (.1) Lus10018290 [exp] 577 / 0 AT1G31280 907 / 0.0 argonaute 2, Argonaute family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G163800 [exp] 1398 / 0 AT1G69440 1304 / 0.0 ZIPPY, ARGONAUTE7, Argonaute family protein (.1) Potri.006G118600 [exp] 624 / 0 AT2G27880 1068 / 0.0 ARGONAUTE 5, Argonaute family protein (.1) Potri.012G037100 [exp] 616 / 0 AT1G48410 1560 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Potri.015G029000 [exp] 613 / 0 AT1G48410 1549 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Potri.001G213700 [exp] 602 / 0 AT2G27880 1214 / 0.0 ARGONAUTE 5, Argonaute family protein (.1) Potri.008G158800 [exp] 592 / 0 AT5G43810 1688 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) Potri.009G001500 [exp] 592 / 0 AT2G27880 1192 / 0.0 ARGONAUTE 5, Argonaute family protein (.1) Potri.010G081300 [exp] 587 / 0 AT5G43810 1663 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) Potri.012G118700 [exp] 577 / 0 AT1G31280 910 / 0.0 argonaute 2, Argonaute family protein (.1) Potri.014G159400 [exp] 385 / 3e-118 AT2G32940 1169 / 0.0 ARGONAUTE 6, Argonaute family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0638 [flax] [poplar] PAZ PF02170 [flax] [poplar] PAZ PAZ domain CL0219 [flax] [poplar] RNase_H PF02171 [flax] [poplar] Piwi Piwi domain CL0219 [flax] [poplar] PF08699 [flax] [poplar] ArgoL1 Argonaute linker 1 domain
Representative CDS sequence Show only first row Show all	>Lus10037136 pacid=23152504 polypeptide=Lus10037136 locus=Lus10037136.g ID=Lus10037136.BGIv1.0 annot-version=v1.0 ATGGAGGACACAGCAGAACAACCAAAACCCACCAAGAAATACACCACAACACCAACAAAGAACAAATCTTTCAGAGGCAGAGCACCTTCAAAAGCCAATA CCACCATTGCTGCTGCTACAAACGACCATCAGTTTCAGTACCATTATCACCACCACCACCACCACCATTACAATCATCATCTGAATCTGAATCAGAATCA GCAGCTGTTTCAGTACTACTCAAACAACAATCACCATTTCCTCAATCATGGCGGATTCTTCAACCAGACCTTCCATTATTACCCAACTCCATTCCCTCAT CTTCCAGCTATAGTACCTCCTTCATTACCATCCTCTCAGTTTCACCAACACGGATTTCTTCCCAAAACCCATCTCCATGACACCAATCCAGCCTCATCTG GACCTGCAATTTCACAAGGTGGTGGTGAGGTACAAGGAAGGAAAGTGATGGGTGGTTCCAAAAAACAACTAGCGATGGTTGATGCTGTAGTAGTTGCAAA AAGGCCTGATTCTGGTGGAGTGGAAGGCTCAATGATCACACTCCTAGCCAATCATTTCCTTGTAAAGTTTGATCCTTCCCAGAAAATCTACCATTACAAT GTGGAGATCTCTCCTAACCCTCCTTCCAAAGAAGTAGCCAGGATGATCAAACAGAAGATGGTGAAAGAAAACCAATCTCTTCTCTCCAATGCTCAGCCAT CTTATGATGGAAGGAAGAATCTTTACAGTCCAGTTCAGTTCCAAAGCGACCGGCTTGAGTTTCACATCAGCTTGCCAATATCAAGCATCAAGCTTACCAA TAGCAGCATTGACTTGAGAGAGAAGGGATTGAAACTGTTTAGGGTGAACATCAACCTTGTGTCAAAGCTAAAAGGGAAAGACTTGAAGTGTTACTTGAAC AAAGAAGGAGATGATTATGTTCCTTTACCTCAGGATTACTTACATGCTTTGGATGTCGTCCTTCGAGAGAGCCCTTCCGAGAATTGCATACCGGTAGGGC GATCGATGTATTCGAGTTCCATGGGAGGTGTTCGGGAGATTGGAGGTGGAGCTGTTGGCTTGAGAGGGTTTTTCCAGAGCCTTAGACCAACTCAGCAAGG GTTAGCTCTCAATGTTGACTTTTCAGTGACTGCATTCCATGAGAGCAACATTGGGGTTATTTTTTACTTGCAGAAGAGGCTAGAGTTTCTCCATGACCTT CCTAAGAGAAAGCTGAGGGGTTTGAGTGGTGAAGAGAGGAAAGAAGTTGAGAAGGCTTTGAAGAACATAAGGGTCTTTGTTAGTCATAGGGAGACTGTTC AGAGGTATAAAGTTTATGGCTTGACTGATGAAGCTACTGAGAATCTCTGCTTTGCTGATAGGGATGGGACGATTCTTCGAGTGGTGGATTACTTCAGAGA CCATTATGGCTATGACATTCAGTTTAGGAACTTGCCTTGCTTGCAGATTAGTAGGAGCAAGCCTTGCTATCTGCCTATGGAGCTTTGCATGATCTGTGAT GGCCAGAAGTTCATTGGGAAGCTGTCAGATGATCAAACTGCTAAGATACTTAACATGGGATGCCAGAGGCCGAAAGAAAGAAAATCGATCATTGATGAAG TTATGCAAGGACCAGTTGGACCAACAAGTGGCAATCAAGCCAAGGAGTTCAAGCTCCATGTCTCAAGGGAAATGACAAGGCTAAAGGGGAGAATTCTCCA GCCTCCAAAGCTGAAGCTTGGCAATGGTGGACATGTAAAGGACTTGGTCCCATCTCGACATGATCGACAATGGAACCTTCTCGACGGCCATGTCTACGAA GGAACGAAGATCGAAAGGTGGGGGTTGATAAGCTTTGGAGGTAGTTCTGAGCAGAAATCCAACATTCCAAGGTTTATAAGGCAGTTATCTCACAGATGTG AACAGTTGGGAATCTTCCTTAACAAAACTACAACATCTAGCCTTCAGTTTGAGCCAACTCAGCTCCTCAACAATGTCTCACTCTTGGAGACTAAGCTCAA GAACATCCAGAGAGCTGGGAATCTCCAGCTGCTGATTTGCTTGATGGAGAAGAAACACAAAGGGTATGCAGATTTGAAGAGGATAGCAGAGACGAGTGCT GGTGTAGTGACTCAATGTTGCTTGTACACCAATCTGGCCAAGTTGAGCTCACAGTTCTTAGCCAATATAGCACTCAAGATCAATGCTAAAGTTGGTGGAT GCACTGTTGCTCTTTACAACTCATTACCCTCTCAGATTCCGAGGCTACTTCATATCGATGAACCGGTAATCTTCATGGGAGCAGATGTCACTCATCCCCA CCCTTTCGACGATTCGAGTCCATCGGTCGCTGCTGTCGTTGGCAGCATGAACTGGCCAGCTGCGAACAAGTACGTTTCGCGGATGAGGTCCCAGACACAC AGGCAAGAGATCATCCATGATTTGGGGGAAATGGTGAAGGAACTGCTTGATGAATTCTACAATGAAGTGAGCAAGCTCCCCAGGAGGATCATGTTCTTTC GAGATGGAGTGAGTGAGACACAGTTCAAGAAGGTTTTGAAGGAAGAACTGCAAGCAATCAAAGAAGCATGCTCGAAATTCCCAGGGTATAGGCCATTGAT CACATTCGCCGTGGTGCAAAAGAGGCACCATACCAAACTGTTCCCTTCCGATCCATCGTCGTTCGTGCAGAACTGCACGAACGACGAGAACATACCACCC GGGACGGTGGTGGACACAGTGATCACACATCCGACCGAGTTTGATTTCTACCTGTGTAGCCATTGGGGTGTGAAGGGAACGAGCAGGCCGACCCATTACC ATGTGTTGTGGGATGAGAACCAGTTTACTTCTGATGAGCTTCAGAAGCTGGTATATAACTTGTGTTACACGTTTGTTAGGTGCACAAAGCCTGTGTCTTT GGTTCCTCCTGTCTACTATGCACATCTGGCTGCATACAGAGGTAGGCTCTATGTAGATCGATCTTCGTCGTCTTCTTCAGGTGTGTGTAGAGCCTCCCCT CCAATAAAGGCAACTCCTTTGCCTAAGTTGAGTGAGAATGTGAGCAAGGTCATGTTTTACTGCTGA
AA sequence Show only first row Show all	>Lus10037136 pacid=23152504 polypeptide=Lus10037136 locus=Lus10037136.g ID=Lus10037136.BGIv1.0 annot-version=v1.0 MEDTAEQPKPTKKYTTTPTKNKSFRGRAPSKANTTIAAATNDHQFQYHYHHHHHHHYNHHLNLNQNQQLFQYYSNNNHHFLNHGGFFNQTFHYYPTPFPH LPAIVPPSLPSSQFHQHGFLPKTHLHDTNPASSGPAISQGGGEVQGRKVMGGSKKQLAMVDAVVVAKRPDSGGVEGSMITLLANHFLVKFDPSQKIYHYN VEISPNPPSKEVARMIKQKMVKENQSLLSNAQPSYDGRKNLYSPVQFQSDRLEFHISLPISSIKLTNSSIDLREKGLKLFRVNINLVSKLKGKDLKCYLN KEGDDYVPLPQDYLHALDVVLRESPSENCIPVGRSMYSSSMGGVREIGGGAVGLRGFFQSLRPTQQGLALNVDFSVTAFHESNIGVIFYLQKRLEFLHDL PKRKLRGLSGEERKEVEKALKNIRVFVSHRETVQRYKVYGLTDEATENLCFADRDGTILRVVDYFRDHYGYDIQFRNLPCLQISRSKPCYLPMELCMICD GQKFIGKLSDDQTAKILNMGCQRPKERKSIIDEVMQGPVGPTSGNQAKEFKLHVSREMTRLKGRILQPPKLKLGNGGHVKDLVPSRHDRQWNLLDGHVYE GTKIERWGLISFGGSSEQKSNIPRFIRQLSHRCEQLGIFLNKTTTSSLQFEPTQLLNNVSLLETKLKNIQRAGNLQLLICLMEKKHKGYADLKRIAETSA GVVTQCCLYTNLAKLSSQFLANIALKINAKVGGCTVALYNSLPSQIPRLLHIDEPVIFMGADVTHPHPFDDSSPSVAAVVGSMNWPAANKYVSRMRSQTH RQEIIHDLGEMVKELLDEFYNEVSKLPRRIMFFRDGVSETQFKKVLKEELQAIKEACSKFPGYRPLITFAVVQKRHHTKLFPSDPSSFVQNCTNDENIPP GTVVDTVITHPTEFDFYLCSHWGVKGTSRPTHYHVLWDENQFTSDELQKLVYNLCYTFVRCTKPVSLVPPVYYAHLAAYRGRLYVDRSSSSSSGVCRASP PIKATPLPKLSENVSKVMFYC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69440		ZIP, AGO7	ZIPPY, ARGONAUTE7, Argonaute f...		Lus10037136 [exp]	0	1
AT5G60250			zinc finger (C3HC4-type RING f...		Lus10036127 [exp]	3.5	0.8618
AT2G01210			Leucine-rich repeat protein ki...		Lus10043480 [exp]	4.2	0.8714
AT2G01210			Leucine-rich repeat protein ki...		Lus10034108 [exp]	4.6	0.8728
AT3G56850	bZIP	DPBF3, AREB3	ABA-responsive element binding...		Lus10008928 [exp]	7.3	0.8309
AT1G69440		ZIP, AGO7	ZIPPY, ARGONAUTE7, Argonaute f...		Lus10036795 [exp]	7.5	0.8317
AT2G22370			unknown protein		Lus10023150 [exp]	12.0	0.8118
AT3G55140			Pectin lyase-like superfamily ...		Lus10003307 [exp]	12.4	0.7934
AT1G09320			agenet domain-containing prote...		Lus10010903 [exp]	12.4	0.8059
AT1G43770			RING/FYVE/PHD zinc finger supe...		Lus10028603 [exp]	15.5	0.8278
AT4G32050			neurochondrin family protein (...		Lus10001536 [exp]	16.9	0.8170

Compare expression of checked genes

Lus10037136 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.