Plant FIBer expression Database

Lus10037138 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G49210 107 / 4e-29 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036792
[exp]
253 / 1e-86 AT5G49210 174 / 2e-55 unknown protein
Lus10032604
[exp]
207 / 2e-68 AT5G49210 188 / 7e-61 unknown protein
Lus10043148
[exp]
204 / 2e-67 AT5G49210 186 / 3e-60 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G317300
[exp]
137 / 4e-41 AT5G49210 93 / 6e-24 unknown protein
PFAM info
Representative CDS sequence
>Lus10037138 pacid=23152448 polypeptide=Lus10037138 locus=Lus10037138.g ID=Lus10037138.BGIv1.0 annot-version=v1.0
ATGGCTACCCGCACCACCGCTGGTGGCGTCGTCCGTTCGACGCGCCGCCTCTTCTCCTCCTACCCCATTGCCACCAGGAAGAACAACCACACGGATACTC
ACACCTTCCTGGACAGGAATTGTTTCTTGGGAAGCTGGGAAGCGCCGAAGCATAATCCAAAGGAGGCTGAGAAAAGACCGGCTCTGTTGCGAAGACAGTA
CTCGAAGCAAGTGAAGGAGGTGCGGAAAGAATATATAGTGGAGATGGGAGCGATGCGGATCGAGAAGCAGAGGAAAGACGAAGCTAGACAAGAGGCCCTC
AGGATCGCCAACGAGGAGCGCCGTAAGTTGAAGGCAGAAGCCGCCAAAGTTAGAGCAGAGGAGCGTAAAGTTGCTGAAGAGGAGTTCCGCCAAATCCTAT
TGAAAGAGCGAGCAGAGAAGCTTGAGAACTGGAGAAGGAAAGAAGCAGAGAGGGAGAAGAAGAAGAAGAAGAAGGAAGCAGTGGAGCTGCTGCGCCGGAA
AAGTTCACTGTGGGTTGATGATGAGAAAGAATTGGAGGCTAAAGTAATCGTAGCCATTTCTGCTTCTAATATACTGTGA
AA sequence
>Lus10037138 pacid=23152448 polypeptide=Lus10037138 locus=Lus10037138.g ID=Lus10037138.BGIv1.0 annot-version=v1.0
MATRTTAGGVVRSTRRLFSSYPIATRKNNHTDTHTFLDRNCFLGSWEAPKHNPKEAEKRPALLRRQYSKQVKEVRKEYIVEMGAMRIEKQRKDEARQEAL
RIANEERRKLKAEAAKVRAEERKVAEEEFRQILLKERAEKLENWRRKEAEREKKKKKKEAVELLRRKSSLWVDDEKELEAKVIVAISASNIL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G49210 unknown protein Lus10037138
[exp]
0 1
AT3G22660 rRNA processing protein-relate... Lus10037050
[exp]
2.6 0.8992
AT3G61540 alpha/beta-Hydrolases superfam... Lus10010141
[exp]
6.5 0.8404
AT2G04630 NRPE6B, NRPB6B RNA polymerase Rpb6 (.1) Lus10015000
[exp]
6.9 0.8960
AT3G25220 FKBP15-1 FK506-binding protein 15 kD-1 ... Lus10003170
[exp]
8.9 0.8856
AT1G23750 Nucleic acid-binding, OB-fold-... Lus10029155
[exp]
9.2 0.8619
AT3G22320 RPB5A, NRPD5, N... RNA POLYMERASE II FIFTH LARGES... Lus10001335
[exp]
10.4 0.8868
AT1G14300 ARM repeat superfamily protein... Lus10036742
[exp]
10.6 0.8544
AT3G60540 Preprotein translocase Sec, Se... Lus10037570
[exp]
12.4 0.8776
AT2G28910 CXIP4 CAX interacting protein 4 (.1) Lus10004961
[exp]
15.1 0.8483
AT2G36130 Cyclophilin-like peptidyl-prol... Lus10017010
[exp]
15.5 0.8638

Lus10037138 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.