Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69450 787 / 0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) AT3G01100 720 / 0 ATHYP1, HYP1 ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1, hypothetical protein 1 (.1.2) AT1G58520 451 / 7e-149 RXW8 lipases;hydrolases, acting on ester bonds (.1.2.3) AT1G10090 435 / 2e-142 Early-responsive to dehydration stress protein (ERD4) (.1) AT3G54510 350 / 1e-110 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) AT4G02900 342 / 2e-106 ERD (early-responsive to dehydration stress) family protein (.1) AT3G21620 340 / 7e-106 ERD (early-responsive to dehydration stress) family protein (.1) AT1G11960 338 / 4e-105 ERD (early-responsive to dehydration stress) family protein (.1) AT1G32090 335 / 1e-103 early-responsive to dehydration stress protein (ERD4) (.1) AT4G22120 333 / 2e-103 ERD (early-responsive to dehydration stress) family protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030431 [exp] 1022 / 0 AT1G69450 867 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Lus10005223 [exp] 742 / 0 AT3G01100 895 / 0.0 ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1, hypothetical protein 1 (.1.2) Lus10036791 [exp] 538 / 0 AT1G69450 426 / 7e-140 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Lus10004597 [exp] 473 / 4e-157 AT1G58520 845 / 0.0 lipases;hydrolases, acting on ester bonds (.1.2.3) Lus10004550 [exp] 466 / 1e-154 AT1G58520 842 / 0.0 lipases;hydrolases, acting on ester bonds (.1.2.3) Lus10010365 [exp] 426 / 2e-139 AT1G58520 800 / 0.0 lipases;hydrolases, acting on ester bonds (.1.2.3) Lus10035300 [exp] 358 / 9e-113 AT3G21620 1146 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Lus10030024 [exp] 356 / 5e-112 AT3G21620 1147 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Lus10043455 [exp] 350 / 6e-110 AT3G54510 883 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G091200 [exp] 947 / 0 AT1G69450 872 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Potri.010G164100 [exp] 912 / 0 AT1G69450 844 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Potri.004G115800 [exp] 759 / 0 AT3G01100 866 / 0.0 ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1, hypothetical protein 1 (.1.2) Potri.002G113800 [exp] 484 / 1e-161 AT1G58520 827 / 0.0 lipases;hydrolases, acting on ester bonds (.1.2.3) Potri.003G200900 [exp] 375 / 5e-120 AT3G54510 886 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Potri.001G133800 [exp] 338 / 7e-105 AT1G32090 1061 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1) Potri.014G156100 [exp] 329 / 6e-102 AT3G21620 1104 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Potri.002G226800 [exp] 328 / 2e-101 AT3G21620 1105 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Potri.004G006000 [exp] 326 / 1e-100 AT4G22120 1139 / 0.0 ERD (early-responsive to dehydration stress) family protein Potri.003G099800 [exp] 324 / 1e-99 AT1G32090 1094 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0416 [flax] [poplar] Anoctamin-like PF02714 [flax] [poplar] RSN1_7TM Calcium-dependent channel, 7TM region, putative phosphate
Representative CDS sequence Show only first row Show all	>Lus10037139 pacid=23152347 polypeptide=Lus10037139 locus=Lus10037139.g ID=Lus10037139.BGIv1.0 annot-version=v1.0 ATGATAGTATCGGCGCTTCTAACTTCGTTGGGAATAAACTCTTGTCTATGTGTTCTGTTCTTCACACTGTATTCTGTACTGAGGAAACAACCGAGTTACT TAAGAGTCTTTATTCCACGCTTCCTGGCCGAAGGGGGCTCCAGACGATTACTTCGCTTGAAATTAAGAAGGTTTATACCGTCTGCGGGGTGGGTGGCAAG AGCATGGAGGTTATCTGAAGAGGACATAATATCATCCAATGGATTGGATGCTTTGGTATTCATGAGAGTCATAACTTTCTGTTTGAAAATATTTGCTTTT GCTGGAGTAATAGGGATCTTTGTTCTTCTTCCAGTGAACGCCCTGGGGACTCAACTTCATGAAATCGACTTTGCTGATATATCAAACAACTCTATGGATG TTTTCACAATTTCAAATGTAAATGATGGCTCAGAAAGGCTGTGGATTCATTTCTCTGCTGTCTACATCTTAACTATATTCATTTGTTGTCTACTTTTTCA TGAGTACAAATATATATCGTTAAAAAGGATTGCTTATTTTTATTCTTCGGATGCTCAGCCACACCAGTTCACCATCTTAGTGAGCAATATTCCTGTCTCC AGTGGTAGCAGTATCAGCGACAGTGTTCAGAGATTCTTCAGAGAGAATCACCCTACTACATATCTTTCTCACGTGGTTATTCGCCGAACTAGCAAAATTC GTGATCTTACAAATGAGGCAAAGAATCTATGCAAAAGGGTTATTCGCTTACGAGATAAATCCTCATATGATCAGCATCAACATTTCACATTGTTTACGGA TAAGGCGGATCGTGTGGATCACTATGAGAAGAGGCTAGAAACAATTGACCAGTATGTGAAATTCGAGCAATCAACCATATCAATGGCAAAAGATACTCGA GCGGCTTTTGTGTCCTTTCGGACGCGATATGCTGCTGCCACTGCTCTTCATTTGCAACAATCCATCAACCCTGTACAGTGGATAACTGAAGAAGCTCCGG AACCCGATGATGTTTATTGGCCTTTCTTCTCATCAACATTCATGCAAAGGTGGACATCAAAGCTCTTGATTGTGGCTGTCTGCATTCTGCTCACACTTCT CTTCCTTATTCCTGTGGTGGTAGTACAAGGCCTTGCAAACCTTAGTCAGTTGGAGGCTTGGTTTCCAGCACTGAAGGGCATTATAACCTCAACATTCATT AGTCAAATAATCACAGGATACCTTCCCAGTCTAATACTTCAGTTGTTTCTAAAGATTGTACCTCCCATAATGAGGTTCCTTTCCTCCATTCAAGGATATA TATCTCTCAGCGAGATTGAGAACAGTGCATGCAACAAAGTAATTTGGTTCACAGTTTGGAACGTCTTTTTTGCAACTGTGTTCTCTGGCTCCGTTTTCCA TCAGCTCTCCATCGTACTCGACCCAAAAAGCATCCCTAGAAAGCTGGGTGTTGCAGTTCCAGCTCAGGCATCGTTTTTCGTAGCTTATGTTGTCACAACT GGATGGACAAGCATATCCTCGGAACTTTTTCGTGTGGTTCCCTTCCTCGGCGTACTAATAGCTAAGCTATTTCGTAGAAGTACTGAGGATGAGGATTGTG AAGTTCCCTCTATCGCTTTCCACAAAGACCTTCCGAGGATACTCTTCTTCGGATTGCTCGGCATCGCTTATTTCTTCCTAGCCCCACTGATTCTACCCTT CCTCCTGGTGTATTTCTGCATGGTATACATCATCTTCCGTAACCAGTTCATAAACGTGTATGCACCCAAGTACGAAACCGGAGGGAGGTTCTGGCCGATG GTACACAACACATTCATCTTCTCCCTTGTACTGATGCACGCCATAGCAGTTGGAATCTTCACACTGAAGAAGCTGCCTTGGGCATCATCTTTAGTCTTCC CACTTCCAGTCCTCACACTTCTCTTCAACGAGTACTGCCGCAAGCGTTTCCTCCCCTTATTCTCTGCTTATCCTGCAGAGGTTTTGGTGAGGAAGGACAG AGCCGACTTCAACAGCGGTGTAATGTCCGACTTCTACAGCAGATTGGTCACGGCCTACGAGGACCCAGCTATGGTGCCAGTTCGTTACTCCAGCAACACC GACAGCCTTAACCAACCGCTTCTATCTCCTCAATCCTGA
AA sequence Show only first row Show all	>Lus10037139 pacid=23152347 polypeptide=Lus10037139 locus=Lus10037139.g ID=Lus10037139.BGIv1.0 annot-version=v1.0 MIVSALLTSLGINSCLCVLFFTLYSVLRKQPSYLRVFIPRFLAEGGSRRLLRLKLRRFIPSAGWVARAWRLSEEDIISSNGLDALVFMRVITFCLKIFAF AGVIGIFVLLPVNALGTQLHEIDFADISNNSMDVFTISNVNDGSERLWIHFSAVYILTIFICCLLFHEYKYISLKRIAYFYSSDAQPHQFTILVSNIPVS SGSSISDSVQRFFRENHPTTYLSHVVIRRTSKIRDLTNEAKNLCKRVIRLRDKSSYDQHQHFTLFTDKADRVDHYEKRLETIDQYVKFEQSTISMAKDTR AAFVSFRTRYAAATALHLQQSINPVQWITEEAPEPDDVYWPFFSSTFMQRWTSKLLIVAVCILLTLLFLIPVVVVQGLANLSQLEAWFPALKGIITSTFI SQIITGYLPSLILQLFLKIVPPIMRFLSSIQGYISLSEIENSACNKVIWFTVWNVFFATVFSGSVFHQLSIVLDPKSIPRKLGVAVPAQASFFVAYVVTT GWTSISSELFRVVPFLGVLIAKLFRRSTEDEDCEVPSIAFHKDLPRILFFGLLGIAYFFLAPLILPFLLVYFCMVYIIFRNQFINVYAPKYETGGRFWPM VHNTFIFSLVLMHAIAVGIFTLKKLPWASSLVFPLPVLTLLFNEYCRKRFLPLFSAYPAEVLVRKDRADFNSGVMSDFYSRLVTAYEDPAMVPVRYSSNT DSLNQPLLSPQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69450			Early-responsive to dehydratio...		Lus10037139 [exp]	0	1
AT4G11570			Haloacid dehalogenase-like hyd...		Lus10002002 [exp]	1.0	0.9290
AT3G07700			Protein kinase superfamily pro...		Lus10006363 [exp]	1.4	0.9155
AT2G36680			Modifier of rudimentary (Mod(r...		Lus10014395 [exp]	3.5	0.8969
AT1G55960			Polyketide cyclase/dehydrase a...		Lus10033334 [exp]	4.9	0.8941
AT5G22290	NAC	FSQ6, FAN, ANAC...	fructose-sensing quantitative ...		Lus10034183 [exp]	11.6	0.7913
AT3G54000			unknown protein		Lus10016465 [exp]	11.9	0.8250
AT1G52080		AR791	actin binding protein family (...		Lus10038254 [exp]	12.0	0.8292
AT2G45530			RING/U-box superfamily protein...		Lus10033252 [exp]	12.4	0.8615
AT2G38610			RNA-binding KH domain-containi...		Lus10034443 [exp]	13.3	0.8606
AT5G38710			Methylenetetrahydrofolate redu...		Lus10034095 [exp]	13.6	0.8369

Compare expression of checked genes

Lus10037139 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.