Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26670 293 / 9e-102 VTI1B, ATVTI12, VTI12 VESICAL TRANSPORT V-SNARE 12, Vesicle transport v-SNARE family protein (.1) AT5G39510 243 / 8e-82 ZIG1, SGR4, ATVTI1A, ATVTI11, ZIG, VTI11 SHOOT GRAVITROPSIM 4, VESICLE TRANSPORT V-SNARE 11, Vesicle transport v-SNARE family protein (.1) AT3G29100 187 / 4e-60 ATVTI13, VTI13 vesicle transport V-snare 13 (.1.2) AT5G39630 119 / 2e-33 Vesicle transport v-SNARE family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036788 [exp] 344 / 4e-121 AT1G26670 243 / 3e-81 VESICAL TRANSPORT V-SNARE 12, Vesicle transport v-SNARE family protein (.1) Lus10021624 [exp] 252 / 2e-85 AT5G39510 326 / 2e-114 SHOOT GRAVITROPSIM 4, VESICLE TRANSPORT V-SNARE 11, Vesicle transport v-SNARE family protein (.1) Lus10034696 [exp] 250 / 2e-83 AT5G39510 318 / 5e-110 SHOOT GRAVITROPSIM 4, VESICLE TRANSPORT V-SNARE 11, Vesicle transport v-SNARE family protein (.1) Lus10026134 [exp] 218 / 2e-72 AT5G39510 255 / 3e-87 SHOOT GRAVITROPSIM 4, VESICLE TRANSPORT V-SNARE 11, Vesicle transport v-SNARE family protein (.1) Lus10000565 [exp] 144 / 5e-43 AT5G39510 178 / 3e-56 SHOOT GRAVITROPSIM 4, VESICLE TRANSPORT V-SNARE 11, Vesicle transport v-SNARE family protein (.1) Lus10021629 [exp] 87 / 1e-19 AT5G61380 326 / 4e-103 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G091000 [exp] 329 / 7e-116 AT1G26670 327 / 5e-115 VESICAL TRANSPORT V-SNARE 12, Vesicle transport v-SNARE family protein (.1) Potri.010G164300 [exp] 325 / 4e-114 AT1G26670 324 / 9e-114 VESICAL TRANSPORT V-SNARE 12, Vesicle transport v-SNARE family protein (.1) Potri.017G087700 [exp] 264 / 4e-90 AT5G39510 321 / 1e-112 SHOOT GRAVITROPSIM 4, VESICLE TRANSPORT V-SNARE 11, Vesicle transport v-SNARE family protein (.1) Potri.004G115700 [exp] 261 / 6e-89 AT5G39510 325 / 5e-114 SHOOT GRAVITROPSIM 4, VESICLE TRANSPORT V-SNARE 11, Vesicle transport v-SNARE family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0147 [flax] [poplar] Traffic PF12352 [flax] [poplar] V-SNARE_C Snare region anchored in the vesicle membrane C-terminus CL0147 [flax] [poplar] Traffic PF05008 [flax] [poplar] V-SNARE Vesicle transport v-SNARE protein N-terminus
Representative CDS sequence Show only first row Show all	>Lus10037141 pacid=23152346 polypeptide=Lus10037141 locus=Lus10037141.g ID=Lus10037141.BGIv1.0 annot-version=v1.0 ATGAGCAACGTTTTCGAAGGATACGAGCGCCAGTACTGCGAGCTCTCCGCTGGTCTGTCTCGCAAGTGCAACTCCACTTCTCTCCTCGCCGACGGAGATA AGAGGAGAGGGAAGATTGAGGAGATAAAATCGGGGCTAGAGGAGTGTGATGTCTTTGTGAGGAAGATGGATCTCGAGGCGAGGAGTTTGCAGCCGAGTGC GAAGGCGATGATGCTTGCTAAGCTTAGGGAGTACAAGTCTGATCTGACTAAGTTGAAGAGGGAATTCAAAGCGATTGCGTCTGGAAACCAAGCTGCTCAC CAGGAGTTGTTGGAATCTGGATCGGCCAATTCAAATCCGGTTTCAACGGAGCAGAGAGAAAGGCTGACCATGTCCATTGACAGACTAAACCAGTCAAGTG ACAGAATCCATGAGAGTAGAAGAACTGTGCTTGAGACGGAAGAACTTGGCATCAACATTCTTGAAGATTTGCACCAACAACGGCAGACTCTACTTCATGC CCATAACAAGCTTCATGGTGTCGATGATGCCATCGACAAGAGCAAGAAAGTCTTGACATCCATGTCACGGAGGATATCCAGGAACAAATGGATCGTCGGC TCCGTAATTGCCGCTCTTGTGTTTGCAATCATACTCATCATCTCCTTCAAGCTCTCTAACTAG
AA sequence Show only first row Show all	>Lus10037141 pacid=23152346 polypeptide=Lus10037141 locus=Lus10037141.g ID=Lus10037141.BGIv1.0 annot-version=v1.0 MSNVFEGYERQYCELSAGLSRKCNSTSLLADGDKRRGKIEEIKSGLEECDVFVRKMDLEARSLQPSAKAMMLAKLREYKSDLTKLKREFKAIASGNQAAH QELLESGSANSNPVSTEQRERLTMSIDRLNQSSDRIHESRRTVLETEELGINILEDLHQQRQTLLHAHNKLHGVDDAIDKSKKVLTSMSRRISRNKWIVG SVIAALVFAIILIISFKLSN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26670		VTI1B, ATVTI12,...	VESICAL TRANSPORT V-SNARE 12, ...		Lus10037141 [exp]	0	1
AT1G43130		LCV2	like COV 2 (.1)		Lus10018869 [exp]	2.2	0.9369
AT2G40110			Yippee family putative zinc-bi...		Lus10028300 [exp]	2.6	0.9098
AT1G43130		LCV2	like COV 2 (.1)		Lus10028564 [exp]	3.0	0.9271
AT5G61500		ATATG3	autophagy 3 (APG3) (.1)		Lus10009026 [exp]	3.5	0.9302
AT2G25070			Protein phosphatase 2C family ...		Lus10026253 [exp]	3.7	0.8964
AT4G21450			PapD-like superfamily protein ...		Lus10018420 [exp]	4.0	0.9055
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10008582 [exp]	6.5	0.9098
AT3G63420		AGG1, ATAGG1	Ggamma-subunit 1 (.1.2)		Lus10042727 [exp]	12.0	0.8993
AT3G62420	bZIP	ATBZIP53	basic region/leucine zipper mo...		Lus10010005 [exp]	12.5	0.9184
AT4G21450			PapD-like superfamily protein ...		Lus10002595 [exp]	13.5	0.8906

Compare expression of checked genes

Lus10037141 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.