Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13990 303 / 1e-103 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036787 [exp] 459 / 6e-165 AT1G13990 297 / 4e-101 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G164400 [exp] 352 / 7e-123 AT1G13990 314 / 6e-108 unknown protein Potri.008G090900 [exp] 221 / 4e-72 AT1G13990 187 / 3e-59 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037142 pacid=23152283 polypeptide=Lus10037142 locus=Lus10037142.g ID=Lus10037142.BGIv1.0 annot-version=v1.0 ATGGATTCCGTGGCGTCGATTTCTCCGTCCATGGTTCTCCCGCCAAGCAACCTCCTCACTCTCCGGCGTCCTCGAGCTTCGTCCTTCTCGTGTTCCTCTT CTTCCTCTCGTAATCGCCGGTGGCAGCTCTTCCTTCCTCGCCTCACTTGCTTGTACAATTCGGATTCGTCGTTTCGGTCTCGGAGACGAGGAAGGCGAGC TTATGGTGGAGTGAACGCCGTCGGTGTTGGAGGTGGAGGAGACGACGAACCTGATGAAGAATTGGAGAGAGCTCTTCATTTGGACGGGACTATCCCGGGA ACATCCGATGAATTTGTGAAGCAGGTCTCCTCTCGCGCCTATGACATGAGGAGGAATCTTCAGCAGACGTTCGACAGCAGCAGCTACGACGTCCTGGAAT CAAATCCATGGAGAGAAACGTCCAAGCCAGTGTATGTACTAACTCACAGAGATAACCAACTCTGCACCATGAAAACCAGAAGAAGCCGCAGTGAAGTCGA AACGGAGCTAGGGATGTTGTTTTCTAAAGGAGGGAAGAAGAGGCCTGATATGGCGAACCAGGCCAAGAAGCCGAGACCCGGGACGAAGTTCCAGATGCTT GTGGAGGATATCAGAGAAGGAGTTCTAGTATTCGAAGACGAGAATGAAGCTGTGAAATACTGCGACTTGCTACAAGGAGGATGCGAAGGTGTAGCAGAAA TCGAAGCTTCCTCCGTGTTTGATCTTTGCCGCAAAATGAGGGGTCTTGCTGTTTTGTTTCGGAGAGGGAGGACTCCGCCATTACCCCAGAGCCTCGAGCT CAATCTCAAGGCCCGCAAGCGGTCCCTGGAAGACCAAGACGATGCAGCATAA
AA sequence Show only first row Show all	>Lus10037142 pacid=23152283 polypeptide=Lus10037142 locus=Lus10037142.g ID=Lus10037142.BGIv1.0 annot-version=v1.0 MDSVASISPSMVLPPSNLLTLRRPRASSFSCSSSSSRNRRWQLFLPRLTCLYNSDSSFRSRRRGRRAYGGVNAVGVGGGGDDEPDEELERALHLDGTIPG TSDEFVKQVSSRAYDMRRNLQQTFDSSSYDVLESNPWRETSKPVYVLTHRDNQLCTMKTRRSRSEVETELGMLFSKGGKKRPDMANQAKKPRPGTKFQML VEDIREGVLVFEDENEAVKYCDLLQGGCEGVAEIEASSVFDLCRKMRGLAVLFRRGRTPPLPQSLELNLKARKRSLEDQDDAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13990			unknown protein		Lus10037142 [exp]	0	1
AT5G27280			Zim17-type zinc finger protein...		Lus10034555 [exp]	1.4	0.8900
AT5G59050			unknown protein		Lus10001433 [exp]	2.2	0.8730
AT1G77930			Chaperone DnaJ-domain superfam...		Lus10012702 [exp]	2.4	0.8920
AT3G49060			U-box domain-containing protei...		Lus10036362 [exp]	2.4	0.8529
AT1G01770			unknown protein		Lus10014782 [exp]	2.6	0.8511
AT5G61670			unknown protein		Lus10016713 [exp]	5.7	0.8790
AT1G77930			Chaperone DnaJ-domain superfam...		Lus10001296 [exp]	6.0	0.8855
AT3G03440			ARM repeat superfamily protein...		Lus10017635 [exp]	7.6	0.7839
AT1G02070			unknown protein		Lus10015899 [exp]	7.9	0.8399
AT2G35940	HD	BLH1, EDA29	embryo sac development arrest ...		Lus10013579 [exp]	8.1	0.8208

Compare expression of checked genes

Lus10037142 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.