Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26690 249 / 2e-85 emp24/gp25L/p24 family/GOLD family protein (.1) AT1G14010 238 / 5e-81 emp24/gp25L/p24 family/GOLD family protein (.1) AT1G69460 237 / 2e-80 emp24/gp25L/p24 family/GOLD family protein (.1) AT2G03290 225 / 8e-76 emp24/gp25L/p24 family/GOLD family protein (.1) AT3G29070 209 / 4e-69 emp24/gp25L/p24 family/GOLD family protein (.1) AT1G09580 153 / 2e-47 emp24/gp25L/p24 family/GOLD family protein (.1) AT2G03040 152 / 2e-47 emp24/gp25L/p24 family/GOLD family protein (.1) AT1G21900 137 / 3e-41 emp24/gp25L/p24 family/GOLD family protein (.1) AT1G57620 134 / 5e-40 emp24/gp25L/p24 family/GOLD family protein (.1) AT3G10780 119 / 6e-34 emp24/gp25L/p24 family/GOLD family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036786 [exp] 336 / 6e-119 AT1G26690 275 / 3e-94 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10030436 [exp] 288 / 8e-100 AT1G26690 263 / 2e-89 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10026625 [exp] 261 / 9e-90 AT1G26690 197 / 9e-64 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10030693 [exp] 197 / 8e-65 AT1G26690 218 / 2e-72 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10005227 [exp] 197 / 1e-64 AT1G26690 231 / 4e-77 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10022972 [exp] 146 / 1e-44 AT1G09580 297 / 3e-103 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10001615 [exp] 144 / 9e-44 AT1G09580 294 / 4e-102 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10041939 [exp] 144 / 2e-43 AT1G21900 286 / 1e-98 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10039381 [exp] 52 / 3e-08 AT3G22845 350 / 1e-124 emp24/gp25L/p24 family/GOLD family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G090700 [exp] 268 / 1e-92 AT1G26690 308 / 1e-107 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.010G164600 [exp] 264 / 5e-91 AT1G69460 272 / 3e-93 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.017G086900 [exp] 240 / 1e-81 AT1G26690 282 / 2e-97 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.004G127200 [exp] 231 / 3e-78 AT1G26690 253 / 5e-86 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.018G145544 [exp] 163 / 4e-52 AT1G26690 194 / 8e-64 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.002G085300 [exp] 159 / 9e-50 AT1G09580 280 / 2e-96 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.001G210900 [exp] 152 / 7e-47 AT1G09580 268 / 7e-92 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.003G019300 [exp] 149 / 9e-46 AT1G09580 275 / 1e-94 emp24/gp25L/p24 family/GOLD family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0521 [flax] [poplar] GOLD-like PF01105 [flax] [poplar] EMP24_GP25L emp24/gp25L/p24 family/GOLD
Representative CDS sequence Show only first row Show all	>Lus10037143 pacid=23152632 polypeptide=Lus10037143 locus=Lus10037143.g ID=Lus10037143.BGIv1.0 annot-version=v1.0 ATGAGCGTGGGGAAGTACAGCGTCATCAACCCTAACGAAGGCCAGCCCTTGCCCGACTCCCACAAGCTCACCGTCCGGGTGACTTCTAGCTATGGGAATA GTTACCACTCGGCGGACAGTGTGGAATCAGGGCAGTTTGCGTTTACGGCTGCGGAGACTGGGGATTATATGGCTTGCTTTTATGCGCCGGATCACACTCC TCCGATCACTTTGACGGTGGATTTTGAGTGGAGGACTGGCGTGGCGGCTAAGGACTGGGGTAGCATTGCGAAGAAAGGATCTGTTGAGGCAATGGAACTG GAGGTGAAAAAGCTGTTCGACACTACTCTCGCCATACAAGAGGAGATAATGTATTTACGTCAGAGGGAAGAAGAGATGCAAGAACTGAACAGATCAACCA ACTCGACGATGGGGTGGCTCGGTGTATTCTCCTTGCTCATGTCTCTGTCAGTGGCCAGCTTCCAGTTCTGGCACCTCAAGACATTTTTCGAGAAGAAGAA GATAATCTAA
AA sequence Show only first row Show all	>Lus10037143 pacid=23152632 polypeptide=Lus10037143 locus=Lus10037143.g ID=Lus10037143.BGIv1.0 annot-version=v1.0 MSVGKYSVINPNEGQPLPDSHKLTVRVTSSYGNSYHSADSVESGQFAFTAAETGDYMACFYAPDHTPPITLTVDFEWRTGVAAKDWGSIAKKGSVEAMEL EVKKLFDTTLAIQEEIMYLRQREEEMQELNRSTNSTMGWLGVFSLLMSLSVASFQFWHLKTFFEKKKII

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26690			emp24/gp25L/p24 family/GOLD fa...		Lus10037143 [exp]	0	1
AT1G21900			emp24/gp25L/p24 family/GOLD fa...		Lus10041939 [exp]	2.8	0.8523
AT1G79010			Alpha-helical ferredoxin (.1)		Lus10040456 [exp]	3.3	0.8241
AT4G31750		WIN2	HOPW1-1-interacting 2 (.1)		Lus10026239 [exp]	4.1	0.8697
AT5G62440			Protein of unknown function (D...		Lus10009570 [exp]	4.6	0.8440
AT3G62790			NADH-ubiquinone oxidoreductase...		Lus10021691 [exp]	5.1	0.8156
AT1G09330		ECHIDNA, ECH	unknown protein		Lus10010063 [exp]	6.0	0.8417
AT1G07020			unknown protein		Lus10042256 [exp]	6.5	0.8071
AT5G40250			RING/U-box superfamily protein...		Lus10032161 [exp]	6.5	0.8365
AT5G54750			Transport protein particle (TR...		Lus10028720 [exp]	7.3	0.8261
AT3G47700		MAG2	maigo2, RINT-1 / TIP-1 family ...		Lus10024240 [exp]	7.7	0.8254

Compare expression of checked genes

Lus10037143 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.