Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14020 756 / 0 O-fucosyltransferase family protein (.1) AT2G03280 687 / 0 O-fucosyltransferase family protein (.1.2) AT5G15740 587 / 0 RRT1 O-fucosyltransferase family protein (.1) AT3G02250 580 / 0 O-fucosyltransferase family protein (.1) AT2G37980 396 / 8e-132 O-fucosyltransferase family protein (.1) AT3G54100 389 / 5e-129 O-fucosyltransferase family protein (.1) AT5G35570 382 / 4e-126 O-fucosyltransferase family protein (.1) AT1G22460 374 / 6e-124 O-fucosyltransferase family protein (.1) AT5G64600 369 / 7e-123 O-fucosyltransferase family protein (.1) AT5G01100 371 / 3e-122 O-fucosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036785 [exp] 944 / 0 AT1G14020 772 / 0.0 O-fucosyltransferase family protein (.1) Lus10026624 [exp] 859 / 0 AT1G14020 767 / 0.0 O-fucosyltransferase family protein (.1) Lus10030437 [exp] 855 / 0 AT1G14020 760 / 0.0 O-fucosyltransferase family protein (.1) Lus10021717 [exp] 608 / 0 AT5G15740 752 / 0.0 O-fucosyltransferase family protein (.1) Lus10034651 [exp] 596 / 0 AT5G15740 754 / 0.0 O-fucosyltransferase family protein (.1) Lus10007975 [exp] 585 / 0 AT5G15740 772 / 0.0 O-fucosyltransferase family protein (.1) Lus10013503 [exp] 585 / 0 AT5G15740 765 / 0.0 O-fucosyltransferase family protein (.1) Lus10036832 [exp] 515 / 4e-180 AT5G15740 591 / 0.0 O-fucosyltransferase family protein (.1) Lus10019195 [exp] 507 / 7e-177 AT5G15740 587 / 0.0 O-fucosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G164700 [exp] 781 / 0 AT1G14020 781 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G090600 [exp] 774 / 0 AT1G14020 776 / 0.0 O-fucosyltransferase family protein (.1) Potri.017G101300 [exp] 609 / 0 AT5G15740 837 / 0.0 O-fucosyltransferase family protein (.1) Potri.004G113500 [exp] 595 / 0 AT5G15740 801 / 0.0 O-fucosyltransferase family protein (.1) Potri.015G048100 [exp] 593 / 0 AT5G15740 716 / 0.0 O-fucosyltransferase family protein (.1) Potri.012G064200 [exp] 589 / 0 AT5G15740 733 / 0.0 O-fucosyltransferase family protein (.1) Potri.016G109700 [exp] 402 / 4e-133 AT2G37980 741 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G161800 [exp] 389 / 3e-130 AT1G22460 678 / 0.0 O-fucosyltransferase family protein (.1) Potri.006G095300 [exp] 382 / 2e-126 AT2G37980 722 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G100400 [exp] 370 / 5e-123 AT1G22460 663 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF10250 [flax] [poplar] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10037144 pacid=23152505 polypeptide=Lus10037144 locus=Lus10037144.g ID=Lus10037144.BGIv1.0 annot-version=v1.0 ATGGATATTAGATCCGAGAGCGTTGGCGGGAGGTCGACGGAGAAGTCGAGTTCGCCGCCGGTGATCCCTAGGACGAGGTTGCAGGTGTGGTTCATTCGAG TTTGCTCGAGTATTCTGATATGGACTTGCTTGGTTCAGCTGGTGGCGGTTGATGAGCTATGGCGCCCGCGTTTCATCACTAATTTGACCACTCGAGTATC TCAGATCGCTGATCCTCTCCATGTCGTTCTGGTCTCCGTCCAGCCACCGCCTCCTCTTCCTCCGGCGAGAAATTACACGAGTAACGGTTTCCTTAAGGTG TCCTGCAACGGGGGCTTGAATCAGATGCGTTCAGCGATTTGTGACATGGTTGCTGTTGCGCGGCTGTTGAACCTGACTTTGCTTGTACCAGAGCTTGATA AAACATCCTTTTGGGCTGACCCCAGTGATTTTGAAGACATCTTTGATGTGAGGCATTTTATCGACTCCCTAAGAGATGAAGTTCGAATTGTTAGAAGATT GCCAAAGAGAATTAGTAAGAAGTATAGATATAGAGTATTGGAGATGCCGCCAGTTAGCTGGTCGAATGAGAAGTACTACCTAGAACAGGTTTTGCCACTG TTCAACAAGTCAAAGGTATTGCATTTCAATAGAACCGATGCACGCTTGGCAAACAATATGATTCCACCTGAACTTCAGAAGCTCCGGTGCCGTGTCAATT TCCAGGCACTAAAATTTACTCCCAAAATTGAGAGTTTGGGTCAGAAGTTAGTACACGTTCTTCAGGAAAGGGGTCCTTATGTGGCTTTGCATCTCAGATA TGAGATGGACATGTTGGCTTTCTCTGGTTGTACCCATGGTTGTACACAAGAAGAAGCTGACCAGCTTAAACGGTTAAGGTATGCATACCCTTGGTGGAGA GAAAAAGAGATAAACTCCGAGGAGAGAAGATCCCAAGGTTTATGCCCTCTGACTCCAGAAGAAGCAGCGTTAATTTTACAAGCTTTAGGCGTTGACAAGG AAACCCAGATATATATAGCCGCTGGTGAGATATATGGAAGTGAACGAAGACTTGCAGCACTAAGAACTGCATTCCCTCGTATAGTGAGAAAGGAAACACT TTTAGACCCATTGGAGCTGCAGCAGTTCCAGAATCATTCATCTCAAATGGCTGCCCTGGATTTTATGGTCTCAGTAGCCAGCAACACTTTCATCCCTACC TACGACGGGAACATGGCAAAAGTTGTCGAAGGCCATCGCAGGTATCTAGGATTCAAGAAGACAATCCTGCTCAATCGAAGAAGACTCGTCGAGTTGCTGA ACCTGCATCAAAACGGTACCCTTCCGTGGAGCGAATTCACGATGGCTGTTCGCCAGGCACACGAGACGAGAATGGGACAACCGGTGCGTCGCAGGGCTAT CCCCGATCGGCCAAAGGAAGAGGATTACTTCTACTCAAACCCTCAGGAGTGTCTGTGTGAGGGAACAAATTGTGATGACCTACTCGGCACTCGCAACTCC AGTTCTGTTCGCTGA
AA sequence Show only first row Show all	>Lus10037144 pacid=23152505 polypeptide=Lus10037144 locus=Lus10037144.g ID=Lus10037144.BGIv1.0 annot-version=v1.0 MDIRSESVGGRSTEKSSSPPVIPRTRLQVWFIRVCSSILIWTCLVQLVAVDELWRPRFITNLTTRVSQIADPLHVVLVSVQPPPPLPPARNYTSNGFLKV SCNGGLNQMRSAICDMVAVARLLNLTLLVPELDKTSFWADPSDFEDIFDVRHFIDSLRDEVRIVRRLPKRISKKYRYRVLEMPPVSWSNEKYYLEQVLPL FNKSKVLHFNRTDARLANNMIPPELQKLRCRVNFQALKFTPKIESLGQKLVHVLQERGPYVALHLRYEMDMLAFSGCTHGCTQEEADQLKRLRYAYPWWR EKEINSEERRSQGLCPLTPEEAALILQALGVDKETQIYIAAGEIYGSERRLAALRTAFPRIVRKETLLDPLELQQFQNHSSQMAALDFMVSVASNTFIPT YDGNMAKVVEGHRRYLGFKKTILLNRRRLVELLNLHQNGTLPWSEFTMAVRQAHETRMGQPVRRRAIPDRPKEEDYFYSNPQECLCEGTNCDDLLGTRNS SSVR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14020			O-fucosyltransferase family pr...		Lus10037144 [exp]	0	1
AT4G30020			PA-domain containing subtilase...		Lus10001310 [exp]	2.6	0.8503
AT4G30710		QWRF8	QWRF domain containing 8, Fami...		Lus10022176 [exp]	3.5	0.8454
AT5G61250		ATGUS1	glucuronidase 1 (.1.2)		Lus10037109 [exp]	4.9	0.8135
AT5G62890			Xanthine/uracil permease famil...		Lus10004228 [exp]	5.7	0.8148
AT2G39750			S-adenosyl-L-methionine-depend...		Lus10001013 [exp]	6.7	0.8180
AT2G38090	MYB	MYB-R	Duplicated homeodomain-like su...		Lus10035518 [exp]	7.2	0.8058
AT4G31050			Biotin/lipoate A/B protein lig...		Lus10025664 [exp]	8.9	0.8012
AT5G23130			Peptidoglycan-binding LysM dom...		Lus10013432 [exp]	9.5	0.8019
AT4G28760			Protein of unknown function (D...		Lus10011911 [exp]	12.2	0.7876
AT1G64390		ATGH9C2	glycosyl hydrolase 9C2 (.1)		Lus10032377 [exp]	12.6	0.8076

Compare expression of checked genes

Lus10037144 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.