Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26560 1428 / 0 ATP-dependent RNA helicase, putative (.1) AT1G32490 706 / 0 EMB2733, ESP3 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) AT5G13010 685 / 0 EMB3011 embryo defective 3011, RNA helicase family protein (.1) AT2G35340 681 / 0 MEE29 maternal effect embryo arrest 29, helicase domain-containing protein (.1) AT3G62310 644 / 0 RNA helicase family protein (.1) AT2G47250 642 / 0 RNA helicase family protein (.1) AT4G16680 548 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G18465 530 / 3e-175 RNA helicase family protein (.1) AT1G26370 517 / 7e-170 RID1 RNA helicase family protein (.1) AT1G27900 513 / 7e-169 RNA helicase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036783 [exp] 1631 / 0 AT3G26560 1790 / 0.0 ATP-dependent RNA helicase, putative (.1) Lus10031647 [exp] 680 / 0 AT1G32490 1545 / 0.0 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) Lus10033690 [exp] 649 / 0 AT1G32490 1399 / 0.0 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) Lus10005261 [exp] 607 / 0 AT3G62310 1300 / 0.0 RNA helicase family protein (.1) Lus10037067 [exp] 533 / 5e-176 AT1G26370 927 / 0.0 RNA helicase family protein (.1) Lus10036991 [exp] 526 / 1e-173 AT1G27900 1089 / 0.0 RNA helicase family protein (.1) Lus10015812 [exp] 524 / 1e-172 AT1G27900 1097 / 0.0 RNA helicase family protein (.1) Lus10027147 [exp] 509 / 2e-167 AT3G26560 555 / 0.0 ATP-dependent RNA helicase, putative (.1) Lus10025127 [exp] 484 / 2e-157 AT4G18465 1033 / 0.0 RNA helicase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G024400 [exp] 1480 / 0 AT3G26560 1768 / 0.0 ATP-dependent RNA helicase, putative (.1) Potri.012G034200 [exp] 1451 / 0 AT3G26560 1744 / 0.0 ATP-dependent RNA helicase, putative (.1) Potri.015G008700 [exp] 697 / 0 AT1G32490 1541 / 0.0 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) Potri.010G172500 [exp] 695 / 0 AT5G13010 1715 / 0.0 embryo defective 3011, RNA helicase family protein (.1) Potri.014G117900 [exp] 651 / 0 AT3G62310 1252 / 0.0 RNA helicase family protein (.1) Potri.002G192500 [exp] 642 / 0 AT3G62310 1276 / 0.0 RNA helicase family protein (.1) Potri.004G052700 [exp] 545 / 0 AT4G18465 1092 / 0.0 RNA helicase family protein (.1) Potri.008G096800 [exp] 528 / 4e-174 AT1G26370 1019 / 0.0 RNA helicase family protein (.1) Potri.010G057200 [exp] 524 / 5e-173 AT1G27900 1077 / 0.0 RNA helicase family protein (.1) Potri.005G071500 [exp] 404 / 4e-119 AT5G10370 1979 / 0.0 helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0021 [flax] [poplar] OB PF00575 [flax] [poplar] S1 S1 RNA binding domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase CL0023 [flax] [poplar] PF04408 [flax] [poplar] HA2 Helicase associated domain (HA2)
Representative CDS sequence Show only first row Show all	>Lus10037145 pacid=23152475 polypeptide=Lus10037145 locus=Lus10037145.g ID=Lus10037145.BGIv1.0 annot-version=v1.0 ATGGTTACCGCTCAGGACGATGACCTCAAAAAGCTGGAGTATCTGTCCCTCGTGTCCAAAGTCTGCACCGAGCTCGAAACTCATTTAGGGATTGGGGAAA AAGTTGCTGCGGAGTTCATCACCGACCTGGGCCGAGAGTCCGCCTCCGTCGACGAATTCGATTCCAAGTTAAAGGAGAGAAATTTGGATATGCCGGATTA TTTAATGCGAACTCTTCTTACTATTATTCATGCCATTCTCCCGCCGAAGGCCAAGGTCGAGGAAACCGGGGGAGGAGGAGGTAAGTACAAATCTCTTTCG ATTGCTGACGGTAAGGTAAGAGTGAGGCAGATTGAGCAAGAGATTGAGATGGAGGCGAAGGTTAGGGTTAAAGATGATAACAGAGATGGGGATAGGGATA GGAAGGACAGGGAGACAGGCAGGGATCGAGATAGAGGTAGAGGTAGAGATGTGGATAACGAGAGGGATAGAGGTCGAGGAGGTCGTGATCGTGAACATGA ACGAGATAGTCGTAGAGATAGAGACTATGATAAAGGTTATGGTAATGGTGATCGTGAACATGAACAAGGTAGGCGCAGAGATAGAGACTATGATAAAGGT TATGGTGATGATGATGATGGGAGGCGTGGAGGGAGAGAACGTGATGATTACAGGGTTAGGGGAAAGCATAAGGACAGTCATCGTGATCGACATAGAAAGG ATGAGGACGACAACCACGATAATGGTTATGATAGGCAAGATGATGGTGGTGGCGAGAGGGCGGGGAGGAACACTGGCCATAGCTCTCAGGAGCCTGAGTT GTATCATGTATATAAAGGGAGGGTGTCCAGGGTTATGGATTCTGGTTGTTTCGTGCAATTGAATGATTTAAAAGGGAAGGAGGGTCTAGTTCACGTCTCT CAGATTGCAACCAGGAAGATCGGTAACGCAAAAGATGTAATCAAAAGGGACCAGGAAGTTTTTGTGAAGGTGATTTCTGTGTCAGGGCAGAAGTTTTCTC TTTCGATGAGAGACGTGGACCAGCATACAGGGAGGGATCTGCTTCCGCTGAAAAAGAGCTCCGATGATGATTCTCATAGGGCCAATCCTTCAGGTACTAG GGATGGTCCCAGAGCTCGCACAGGCTTGTCAGGGATCAGGATTGTGGAAGAAGATGACGCTGTTCCATCTAGAAGGCCACTAAAGAGGATGAGTTCACCA GAAATATGGGAAGCTAAGCAGTTGATTGCTTCAGGGGTTCTGAGTGTGAAAGAGTTCCCTATGTATGATGAAGAAGCAGATGGCCTGCTCTATGAAGAGG AAGGAGCTGAGGAAGAACTTGAAATTGAATTGAATGAAGATGAACCTGCATTTCTGCAGGGGCAAACTAGGTCTTCGGTTGATATGTCACCAGTGAAGAT CTTTAAGAATCCAGAAGGGTCACTGAGTCGTGCAGCTGCTCTTCAGTCTGCCCTTATCAAGGAGAGGAGGGAAGTAAGGGAACAGCAGCAAAGAACAATG CTTGATTCCATACCAAAGGATCTGAATCGTCCTTGGGAAGATCCGATGCCAGAGAGTGGTGAGAGGCATCTGGCCCAGGAACTTAGGGGTGTGGGTTTGT CAGCATACGACATGCCTGAATGGAAGAAGGATGCTTATGGAAAGGCATTGACTTTTGGGCAGAGGTCAAAACTATCACTTCAGGAGCAGCGACAAAGCTT GCCCATTTACAAATTGAAGAAAGAGTTAGTTCAGGCTGTTCATGATAATCAGGTTCTGGTTGTTATTGGTGAAACAGGTTCTGGCAAGACTACACAAGTA ACCCAGTATCTTGCTGAATCTGGTTATACTACAAAGGGTAAGATTGGTTGTACTCAGCCCCGTAGGGTTGCTGCCATGTCTGTGGCGAAACGTGTCGCTG AAGAGTTTGGTTGTCGCTTAGGAGAAGATGTTGGATATGCCATTCGTTTCGAAGATTGTACCGGGCCTGATACTGTCATCAAGTATATGACTGACGGTAT GCTTCTTAGGGAAATCTTGATTGATGAGAATCTCTCTCAATATTCCGTGATAATGCTTGATGAAGCTCACGAGAGAACTATTCACACTGATGTTCTTTTT GGACTTCTTAAGAAGTTGGTGAAGAGAAGACCCGATCTTCGTTTGATTGTTACGTCTGCCACCCTGGATGCCGAAAAATTCTCTGGTTACTTTTTCAGCT GTAACATATTCACCATTCCCGGAAGGACATTCCCTGTGGAGATTTTGTACACTAAGCAGCCTGAAAGTGATTACTTAGATGCTGCTCTAATCACCGTCTT ACAGATCCACTTGACGGAACCCGAAGGTGATATACTTGTGTTCTTAACGGGACAGGAAGAGATTGATTTTGCGTGCCAGTGTCTATTTGACCGGATGAAG GCTCTAGGGAAAAATGTTCCAGAATTGATCATATTACCAGTTTACAGTGCCCTTCCTAGTGAGATGCAGTCAAGAATCTTCGATCCAGCTCCTCCAGGCA AAAGGAAGGTGGTCGTGGCAACCAATATTGCAGAGGCATCATTGACAATTGATGGGATATTTTATGTCATTGATCCAGGGTTTGCTAAACAGAACGTATA CAATCCAAAGCAAGGTCTTGATTCTTTGGTCATCACTCCCATCTCACAAGCATCCGCTAAGCAAAGAGCTGGACGTGCCGGGCGTACTGGTCCGGGGAAA TGTTACCGTCTTTACACGGAAAGTGCCTACCGGAATGAGATGTCCCCTACCTCTGTTCCAGAAATCCAAAGAATCAATCTTGGGATGGTAACGCTTACAA TGAAGGCCATGGGAATCAACGATCTCTTATCTTTCGATTTCATGGACCCTCCATCACCTCAAGCCCTTATCTCCGCCATGGAGCAGCTCTACAGTCTAGG CGCTTTGGATGAGGAGGGACTACTTACCAAGTTGGGGAGGAAAATGGCCGAGTTTCCTCTCGACCCTCCACTATCAAAGATGCTGCTCGCTAGTGTAGAC CTTGGATGCAGCGATGAAATTTTAACCATCATTGCCATGATCCAAACTGGGAACATATTCTACAGGCCTAGAGAGAAACAAGCACAGGCTGATCAGAAGA GGGCGAAATTTTTCCAGCCGGAAGGAGACCACTTGACCTTGCTTGCTGTTTATGAGGCCTGGAAAGCAAAGAACTTCTCTGGCCCTTGGTGCTTCGACAA CTTTGTTCAGTCCAGATCCTTAAGGAGGGCACAAGACGTCAGAAAGCAGCTTCTCACCATCATGGACAAGTATGATCTCTAA
AA sequence Show only first row Show all	>Lus10037145 pacid=23152475 polypeptide=Lus10037145 locus=Lus10037145.g ID=Lus10037145.BGIv1.0 annot-version=v1.0 MVTAQDDDLKKLEYLSLVSKVCTELETHLGIGEKVAAEFITDLGRESASVDEFDSKLKERNLDMPDYLMRTLLTIIHAILPPKAKVEETGGGGGKYKSLS IADGKVRVRQIEQEIEMEAKVRVKDDNRDGDRDRKDRETGRDRDRGRGRDVDNERDRGRGGRDREHERDSRRDRDYDKGYGNGDREHEQGRRRDRDYDKG YGDDDDGRRGGRERDDYRVRGKHKDSHRDRHRKDEDDNHDNGYDRQDDGGGERAGRNTGHSSQEPELYHVYKGRVSRVMDSGCFVQLNDLKGKEGLVHVS QIATRKIGNAKDVIKRDQEVFVKVISVSGQKFSLSMRDVDQHTGRDLLPLKKSSDDDSHRANPSGTRDGPRARTGLSGIRIVEEDDAVPSRRPLKRMSSP EIWEAKQLIASGVLSVKEFPMYDEEADGLLYEEEGAEEELEIELNEDEPAFLQGQTRSSVDMSPVKIFKNPEGSLSRAAALQSALIKERREVREQQQRTM LDSIPKDLNRPWEDPMPESGERHLAQELRGVGLSAYDMPEWKKDAYGKALTFGQRSKLSLQEQRQSLPIYKLKKELVQAVHDNQVLVVIGETGSGKTTQV TQYLAESGYTTKGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEDVGYAIRFEDCTGPDTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTIHTDVLF GLLKKLVKRRPDLRLIVTSATLDAEKFSGYFFSCNIFTIPGRTFPVEILYTKQPESDYLDAALITVLQIHLTEPEGDILVFLTGQEEIDFACQCLFDRMK ALGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTGPGK CYRLYTESAYRNEMSPTSVPEIQRINLGMVTLTMKAMGINDLLSFDFMDPPSPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLDPPLSKMLLASVD LGCSDEILTIIAMIQTGNIFYRPREKQAQADQKRAKFFQPEGDHLTLLAVYEAWKAKNFSGPWCFDNFVQSRSLRRAQDVRKQLLTIMDKYDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26560			ATP-dependent RNA helicase, pu...		Lus10037145 [exp]	0	1
AT2G33290		SDG3, ATSUVH2, ...	SET DOMAIN-CONTAINING PROTEIN ...		Lus10014457 [exp]	3.9	0.8872
AT4G04950		AtGRXS17	Arabidopsis thaliana monothiol...		Lus10018486 [exp]	5.3	0.8672
AT1G09620			ATP binding;leucine-tRNA ligas...		Lus10024704 [exp]	5.4	0.9071
AT2G32910			DCD (Development and Cell Deat...		Lus10001728 [exp]	5.7	0.8893
AT2G30110		ATUBA1, MOS5	MODIFIER OF SNC1 5, ubiquitin-...		Lus10012507 [exp]	5.8	0.9006
AT5G02310		PRT6, CER3	proteolysis 6 (.1)		Lus10024393 [exp]	6.0	0.8856
AT3G60240		CUM2, EIF4G	CUCUMOVIRUS MULTIPLICATION 2, ...		Lus10028156 [exp]	8.3	0.8969
AT1G13980		VAN7, EMB30, GN	VASCULAR NETWORK 7, GNOM, EMBR...		Lus10030432 [exp]	8.4	0.8787
AT5G19130			GPI transamidase component fam...		Lus10032125 [exp]	8.9	0.8839
AT5G14950		GMII, ATGMII	golgi alpha-mannosidase II (.1...		Lus10015337 [exp]	12.8	0.8768

Compare expression of checked genes

Lus10037145 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.