Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14040 344 / 5e-112 EXS (ERD1/XPR1/SYG1) family protein (.1) AT2G03240 317 / 1e-101 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G26730 298 / 6e-95 EXS (ERD1/XPR1/SYG1) family protein (.1) AT2G03260 298 / 1e-94 EXS (ERD1/XPR1/SYG1) family protein (.1) AT2G03250 290 / 1e-91 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G35350 275 / 5e-86 EXS (ERD1/XPR1/SYG1) family protein (.1) AT4G25350 268 / 1e-83 SHB1 SHORT HYPOCOTYL UNDER BLUE1, EXS (ERD1/XPR1/SYG1) family protein (.1) AT3G29060 249 / 5e-76 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G69480 213 / 2e-62 EXS (ERD1/XPR1/SYG1) family protein (.1) AT3G23430 91 / 6e-20 PHO1, ATPHO1 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036779 [exp] 447 / 7e-152 AT1G14040 1080 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10037147 [exp] 444 / 2e-150 AT1G14040 1071 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10030439 [exp] 397 / 2e-132 AT1G14040 1127 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10026623 [exp] 390 / 7e-130 AT1G14040 1058 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10030440 [exp] 381 / 4e-126 AT1G14040 1048 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10030438 [exp] 355 / 2e-116 AT1G14040 976 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10036782 [exp] 197 / 8e-60 AT1G14040 322 / 4e-103 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10036781 [exp] 197 / 9e-60 AT1G14040 561 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10000203 [exp] 189 / 2e-56 AT1G14040 610 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G090400 [exp] 370 / 2e-122 AT1G14040 1037 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G164900 [exp] 365 / 4e-120 AT1G14040 992 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G165300 [exp] 362 / 4e-119 AT1G14040 1022 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G165800 [exp] 358 / 3e-117 AT1G14040 1032 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.016G032900 [exp] 293 / 6e-93 AT1G14040 865 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.017G086800 [exp] 284 / 3e-89 AT3G29060 853 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.008G090300 [exp] 170 / 4e-47 AT1G69480 831 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G069000 [exp] 80 / 3e-16 AT3G23430 1069 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) Potri.010G165400 [exp] 77 / 5e-16 AT1G69480 115 / 2e-29 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.008G110800 [exp] 78 / 2e-15 AT1G68740 1096 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03105 [flax] [poplar] SPX SPX domain CL0182 [flax] [poplar] IT PF03124 [flax] [poplar] EXS EXS family
Representative CDS sequence Show only first row Show all	>Lus10037146 pacid=23152324 polypeptide=Lus10037146 locus=Lus10037146.g ID=Lus10037146.BGIv1.0 annot-version=v1.0 ATGGCTTCGGACGAAGGTGGAGAGTATGAGCTGGTCTACTTCAGAAGGCTGGATGATGAGTTCAATAAAGTGAACAGCTTTTACAAGAGCAAAGTGGATC AGGTTCTGAAAGAGGCTGATACCTTGAACAAGCAAATAGATGCTTTCATTGCTTTTCGGATCAAGGTCGAGAACCCGACCGGTTGGTCTAGTGGCGAACG GGCGGAGGAGATGTCCCGGCTGGCTTTGGATGTTGCAGCTTCTGCTGCTACATTGGATGCTACCACTCCTCCTAAAGGAGCCAAAGCAGGCAATAACCAG AACAAAATGGAAAAGAAGAATGATAAGGTAAAGGAAGTGAAAGTGCAGATACCAGCTCAGCTGGCGGTACTACATCATGTGCATATGAACAACACGTTGG AGACTCCTCGGTCCACCATTAAAGGCTTCCTCAAAGTTCCAGGGCACACAAATCTCAGATTCACAAGGGGAAACCTCAGGAAAGTCGAAAAGCAGCTGAA GCGAGCTTTCGTCGACCAGAAGCTTCGCCTTCTTAGGAGCTACAGTTTCTTGAATACGTTTACCATGGGTGAGAGACGCTTAAGAATGAGCATCTCGAGG CCAAAAACTAAAACCGAAAGGCATAGGATATCGTTTACCATGGGTTTTTTCTGTGGTTCCATTGCAGCTATTATTATAGCCATAGCCCTGATCATCAGAG CCCGTAATATCATGAATAAGCCCGGCAGAATACAGTACATGGAAACCATGTTTCCACTTTACAGCTTGTTTGGATTCATTGTTCTGCACATTGTCATGTA TGCTGCAAATATCTACTTCTGGAAGCGATTCCGGGTGAACTATTCATTCATTTTTGGGTTCAAATCCGGGACCGAACTAGGCTACAGGCAAGTCCTCCTT GTGGCTTTTGGAATTGCAGTCCTAGCACTTTGCAGTGTGCTCTCAAACCTAGACATGGAAATGGACCCTTTGACAAAGGATTACCAAGCCTATACCGAAC GGATCCCTCTCGGCTTGATTATTGTAACATTCTTTCCTCCTGGCGTAATGCACACTTAA
AA sequence Show only first row Show all	>Lus10037146 pacid=23152324 polypeptide=Lus10037146 locus=Lus10037146.g ID=Lus10037146.BGIv1.0 annot-version=v1.0 MASDEGGEYELVYFRRLDDEFNKVNSFYKSKVDQVLKEADTLNKQIDAFIAFRIKVENPTGWSSGERAEEMSRLALDVAASAATLDATTPPKGAKAGNNQ NKMEKKNDKVKEVKVQIPAQLAVLHHVHMNNTLETPRSTIKGFLKVPGHTNLRFTRGNLRKVEKQLKRAFVDQKLRLLRSYSFLNTFTMGERRLRMSISR PKTKTERHRISFTMGFFCGSIAAIIIAIALIIRARNIMNKPGRIQYMETMFPLYSLFGFIVLHIVMYAANIYFWKRFRVNYSFIFGFKSGTELGYRQVLL VAFGIAVLALCSVLSNLDMEMDPLTKDYQAYTERIPLGLIIVTFFPPGVMHT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25350		SHB1	SHORT HYPOCOTYL UNDER BLUE1, E...		Lus10037146 [exp]	0	1
AT3G04290		ATLTL1, LTL1	Li-tolerant lipase 1 (.1)		Lus10036966 [exp]	1.0	0.9984
AT2G39530			Uncharacterised protein family...		Lus10031305 [exp]	2.4	0.9851
					Lus10000914 [exp]	3.0	0.9851
AT5G59700			Protein kinase superfamily pro...		Lus10023324 [exp]	4.0	0.8909
AT3G54340	MADS	AP3, ATAP3	APETALA 3, K-box region and MA...		Lus10041807 [exp]	4.9	0.7682
AT4G20780		CML42	calmodulin like 42 (.1)		Lus10035611 [exp]	5.8	0.7189
AT4G22990			Major Facilitator Superfamily ...		Lus10009314 [exp]	6.3	0.8357
					Lus10020633 [exp]	7.2	0.7492
AT3G54220	GRAS	SGR1, SCR	SHOOT GRAVITROPISM 1, SCARECRO...		Lus10033912 [exp]	9.6	0.6728
AT3G22040			Domain of unknown function (DU...		Lus10007506 [exp]	10.5	0.7020

Compare expression of checked genes

Lus10037146 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.