Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14060 74 / 2e-17 GCK domain-containing protein (.1) AT5G57570 56 / 6e-11 GCK domain-containing protein (.1) AT5G57640 52 / 8e-09 GCK domain-containing protein (.1) AT5G02210 49 / 4e-08 GCK domain-containing protein (.1) AT2G03230 41 / 3e-05 GCK domain-containing protein (.1) AT1G23201 41 / 5e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026621 [exp] 86 / 9e-22 AT1G14060 95 / 1e-24 GCK domain-containing protein (.1) Lus10030441 [exp] 85 / 3e-21 AT1G14060 97 / 3e-25 GCK domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G081400 [exp] 75 / 6e-18 AT1G14060 99 / 8e-27 GCK domain-containing protein (.1) Potri.013G109100 [exp] 74 / 2e-17 AT1G14060 100 / 5e-27 GCK domain-containing protein (.1) Potri.013G099100 [exp] 72 / 1e-16 AT1G14060 92 / 2e-23 GCK domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07802 [flax] [poplar] GCK GCK domain
Representative CDS sequence Show only first row Show all	>Lus10037148 pacid=23152618 polypeptide=Lus10037148 locus=Lus10037148.g ID=Lus10037148.BGIv1.0 annot-version=v1.0 ATGGGAGCCGTAATTTCCTCAACTAGGAGCCCTACCCCGCCAACATTGTCACCCGTTCCCGCCAATGCCAGCGACCAAATTTCTCCTCCCGCCGGCACGG CGTCTCCACAAACTACGGCGGAAGGGGAGGAAGAGGAAGAATGTGGTTTCTGCTTGTTCATGAAAGGAGGGCCGTGCAAGGATGAATTCATAGCTTGGAA GGATTGCGCTGAGGAGAGGAAAGGGGGAGAAGAAGTTGAGCTAGCGACCAAGTGTTCGGAGGTAACTTTGGTTATGAAGAGGTGTCTGGAGGCGAATCCG GACTATTACGGGCCAATCTTGAAGGCTGAGAAGAAGGCTGAAGAGCTGGCCGCAAAGGAGGAAGAGAAGGAGAAGAATTATGAAATTGCTACTTCTTTCA GTCCGTGA
AA sequence Show only first row Show all	>Lus10037148 pacid=23152618 polypeptide=Lus10037148 locus=Lus10037148.g ID=Lus10037148.BGIv1.0 annot-version=v1.0 MGAVISSTRSPTPPTLSPVPANASDQISPPAGTASPQTTAEGEEEEECGFCLFMKGGPCKDEFIAWKDCAEERKGGEEVELATKCSEVTLVMKRCLEANP DYYGPILKAEKKAEELAAKEEEKEKNYEIATSFSP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14060			GCK domain-containing protein ...		Lus10037148 [exp]	0	1
AT2G02590			unknown protein		Lus10013278 [exp]	8.9	0.7550
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10031423 [exp]	10.8	0.7539
AT5G01650			Tautomerase/MIF superfamily pr...		Lus10014233 [exp]	12.8	0.7520
AT3G49170		EMB2261	embryo defective 2261, Tetratr...		Lus10042161 [exp]	13.1	0.7365
AT4G26670			Mitochondrial import inner mem...		Lus10032577 [exp]	17.5	0.7330
AT5G64670			Ribosomal protein L18e/L15 sup...		Lus10032390 [exp]	27.3	0.7474
AT4G34540			NmrA-like negative transcripti...		Lus10023558 [exp]	28.5	0.7072
AT5G09995			unknown protein		Lus10035858 [exp]	28.7	0.7280
AT1G07780		TRP6, PAI1	TRANSIENT RECEPTOR POTENTIAL 6...		Lus10007494 [exp]	35.7	0.7436
AT3G15000			cobalt ion binding (.1)		Lus10032618 [exp]	37.4	0.7464

Compare expression of checked genes

Lus10037148 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.