Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036778 [exp] 149 / 4e-45 ND 39 / 0.003 Lus10037151 [exp] 84 / 3e-20 AT5G02700 60 / 2e-10 F-box/RNI-like superfamily protein (.1) Lus10028722 [exp] 76 / 2e-16 AT2G42730 76 / 1e-14 F-box family protein (.1.2) Lus10011267 [exp] 59 / 1e-10 ND 39 / 0.002 Lus10021237 [exp] 53 / 7e-09 ND / Lus10028649 [exp] 51 / 9e-08 AT1G21380 452 / 7e-152 Target of Myb protein 1 (.1) Lus10032314 [exp] 48 / 5e-07 ND / Lus10028610 [exp] 41 / 8e-05 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037149 pacid=23152316 polypeptide=Lus10037149 locus=Lus10037149.g ID=Lus10037149.BGIv1.0 annot-version=v1.0 ATGCCTCTTTGCTACGTAAACTCATTGTTGCGGGATCCCCAATTGAAGTACTTGGAAGTAATCAGCTGCCCTCGCCTTTCCTCCATGAAGATTGATAATG CTCCTAGCCTTATCCGGGTTGTTTATCGTGGTCTATGGGCCGGTGTGAGTTTCGAGAACTGTCCATCTCTTGTGGATGTGGACGTATCTTATGGGCACGA GTCGTCTGAATTTGCATTTGATTCCCTTTCCCCTTACGCTGGTCAGCTCGACTCTCTTTCGTTGGCGATAGACCCTTCGAACATGTTCTTTCCTGAAATG GTTATGGATGAATTCAGCTCACTTGAGCAACTGAAGATCAAAGTAGTTGGTGCAATATCTGATGATGCCATACTTCGATTAATTCCATTATTACACGCTT GTCCTCGGTTGCATACACTAAGAGTGGAGGTGAATGTGGAGTACAATCCGGACGGGGTGTGCGTATGA
AA sequence Show only first row Show all	>Lus10037149 pacid=23152316 polypeptide=Lus10037149 locus=Lus10037149.g ID=Lus10037149.BGIv1.0 annot-version=v1.0 MPLCYVNSLLRDPQLKYLEVISCPRLSSMKIDNAPSLIRVVYRGLWAGVSFENCPSLVDVDVSYGHESSEFAFDSLSPYAGQLDSLSLAIDPSNMFFPEM VMDEFSSLEQLKIKVVGAISDDAILRLIPLLHACPRLHTLRVEVNVEYNPDGVCV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10037149 [exp]	0	1
AT5G22450			unknown protein		Lus10000530 [exp]	4.6	1.0000
AT4G17220		ATMAP70-5	microtubule-associated protein...		Lus10003908 [exp]	6.5	1.0000
					Lus10011425 [exp]	9.0	1.0000
AT3G02100			UDP-Glycosyltransferase superf...		Lus10015750 [exp]	9.2	1.0000
AT4G13090		XTH2	xyloglucan endotransglucosylas...		Lus10032879 [exp]	11.2	1.0000
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Lus10031524 [exp]	11.6	1.0000
					Lus10007184 [exp]	12.1	1.0000
					Lus10007226 [exp]	13.0	1.0000
AT2G28605			Photosystem II reaction center...		Lus10009159 [exp]	13.7	1.0000
AT4G05120		FUR1, ENT3, FLU...	FUDR RESISTANT 1, EQUILIBRATIV...		Lus10018414 [exp]	15.2	1.0000

Compare expression of checked genes

Lus10037149 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.