Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02700 60 / 2e-10 F-box/RNI-like superfamily protein (.1) AT3G28410 58 / 1e-09 F-box/RNI-like superfamily protein (.1) AT3G18150 49 / 8e-07 RNI-like superfamily protein (.1) AT3G03360 47 / 6e-06 F-box/RNI-like superfamily protein (.1) AT1G13570 45 / 1e-05 F-box/RNI-like superfamily protein (.1) AT1G49610 45 / 1e-05 F-box family protein (.1) AT3G58860 45 / 1e-05 F-box/RNI-like superfamily protein (.1) AT5G03100 45 / 2e-05 F-box/RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028722 [exp] 135 / 2e-37 AT2G42730 76 / 1e-14 F-box family protein (.1.2) Lus10018863 [exp] 103 / 2e-26 AT5G44950 62 / 1e-10 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10036778 [exp] 101 / 1e-25 ND 39 / 0.003 Lus10037149 [exp] 84 / 3e-20 ND 40 / 3e-04 Lus10004525 [exp] 88 / 7e-20 AT4G01840 402 / 3e-137 Ca2+ activated outward rectifying K+ channel 5, Ca2+ activated outward rectifying K+ channel 5 (.1) Lus10003089 [exp] 80 / 4e-18 AT5G53840 54 / 3e-08 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10021237 [exp] 70 / 4e-14 ND / Lus10032314 [exp] 66 / 1e-12 ND / Lus10028602 [exp] 62 / 3e-11 AT1G80960 50 / 1e-06 F-box and Leucine Rich Repeat domains containing protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G042900 [exp] 61 / 1e-10 AT1G61330 226 / 2e-68 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Potri.017G107600 [exp] 57 / 2e-09 AT1G13570 196 / 4e-58 F-box/RNI-like superfamily protein (.1) Potri.004G034500 [exp] 52 / 7e-08 AT1G61330 175 / 3e-49 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Potri.010G134200 [exp] 44 / 3e-05 AT1G13570 526 / 0.0 F-box/RNI-like superfamily protein (.1) Potri.004G224975 [exp] 40 / 0.001 AT5G53840 48 / 4e-06 F-box/RNI-like/FBD-like domains-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037151 pacid=23152488 polypeptide=Lus10037151 locus=Lus10037151.g ID=Lus10037151.BGIv1.0 annot-version=v1.0 ATGGATAGAAGGCTTGTGTACATCAATTGGGTGACTAGGGTTTTGAGTCATCTCATCAATGTTTCCAAGGTAAACAAGCTTCGTGTTTGCTTTAACTTGA AAGCCGAATCCAATTCCCAGGGCAAAATTGATAGATGGATTGAGTTTGTCATATCAAAGGGGGTTGAGCACCTTGATCTCAACTTTGGGAAGACGGTTGA AGGGTTCTTTTCCTTTCATATCCCAGACTATTGCATCAAAGCTCCAACCGTTTTGTCTAATATCAAGTACCTTAGATCTCTGCGTTTGAGTCATGTTGAT GTAAAGAAAAACACTGTTGAACATTTTATCATCAACTGTCCCTTACTTGAAGAGTTAGCTCTGGACAATGCCTCTTTGCTACGTAAACTCATTGTCGTGA GATCCCCAGCATTGAAGTACTTGGAAGTAACCAGCTGCTGTCGCCTTTCCTCCATGAGGATTGATCACGCTCCTAGCGTTACCCGCATTGTCCATTGTGG TCTGTGGACGAGGGTGAGTTTCCACAACTGTCCATCTCTGGTGGATGTGGACATAACTTTTGATGATTGGCGTAACTCGCCTCATCCACCGCTCAATTCC CTTGCCGCTATGCTGGCCAGCTCGAGTCTCTTTCCTTGGAGATCGACCATGTAA
AA sequence Show only first row Show all	>Lus10037151 pacid=23152488 polypeptide=Lus10037151 locus=Lus10037151.g ID=Lus10037151.BGIv1.0 annot-version=v1.0 MDRRLVYINWVTRVLSHLINVSKVNKLRVCFNLKAESNSQGKIDRWIEFVISKGVEHLDLNFGKTVEGFFSFHIPDYCIKAPTVLSNIKYLRSLRLSHVD VKKNTVEHFIINCPLLEELALDNASLLRKLIVVRSPALKYLEVTSCCRLSSMRIDHAPSVTRIVHCGLWTRVSFHNCPSLVDVDITFDDWRNSPHPPLNS LAAMLASSSLFPWRSTM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02700			F-box/RNI-like superfamily pro...		Lus10037151 [exp]	0	1
AT2G45120	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10042872 [exp]	5.9	0.5884
AT2G25010			Aminotransferase-like, plant m...		Lus10003764 [exp]	7.3	0.6248
AT5G40250			RING/U-box superfamily protein...		Lus10008797 [exp]	10.3	0.6248
					Lus10009363 [exp]	11.2	0.6090
AT1G65440		GTB1	global transcription factor gr...		Lus10034231 [exp]	14.4	0.6013
					Lus10003636 [exp]	24.4	0.5554
AT4G18360			Aldolase-type TIM barrel famil...		Lus10042495 [exp]	25.4	0.5331
					Lus10022068 [exp]	31.8	0.5251
					Lus10028673 [exp]	36.1	0.5213
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10016224 [exp]	40.1	0.5222

Compare expression of checked genes

Lus10037151 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.