Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03220 564 / 0 ATFUT1, ATFT1, FT1, MUR2 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) AT2G03210 557 / 0 ATFUT2, FUT2 fucosyltransferase 2 (.1) AT1G14070 494 / 3e-173 FUT7 fucosyltransferase 7 (.1) AT1G14080 478 / 6e-167 ATFUT6, FUT6 fucosyltransferase 6 (.1) AT1G14100 470 / 7e-164 FUT8 fucosyltransferase 8 (.1) AT2G15390 448 / 5e-155 ATFUT4, FUT4 fucosyltransferase 4 (.1.2) AT2G15350 439 / 5e-153 ATFUT10, FUT10 fucosyltransferase 10 (.1) AT2G15370 421 / 2e-144 ATFUT5, FUT5 ARABIDOPSIS FUCOSYLTRANSFERASE 5, fucosyltransferase 5 (.1) AT1G14110 416 / 5e-143 ATFUT9, FUT9 fucosyltransferase 9 (.1) AT1G74420 348 / 9e-116 ATFUT3, FUT3 fucosyltransferase 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036776 [exp] 837 / 0 AT2G03220 659 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10008696 [exp] 441 / 1e-151 AT2G03220 504 / 3e-174 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10041642 [exp] 381 / 1e-128 AT2G03220 454 / 8e-155 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10029049 [exp] 373 / 8e-125 AT2G03220 450 / 5e-153 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10041641 [exp] 351 / 1e-116 AT1G14100 426 / 5e-144 fucosyltransferase 8 (.1) Lus10026128 [exp] 350 / 2e-116 AT2G03220 395 / 4e-132 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10041644 [exp] 329 / 2e-108 AT2G03220 379 / 7e-126 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10024076 [exp] 322 / 1e-105 AT2G03220 374 / 5e-124 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10013549 [exp] 314 / 2e-102 AT2G03220 357 / 4e-117 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G090000 [exp] 634 / 0 AT2G03220 744 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.003G191500 [exp] 481 / 2e-167 AT2G03220 570 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.003G191200 [exp] 453 / 1e-156 AT2G03220 570 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.001G034100 [exp] 448 / 8e-155 AT2G03220 560 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.003G191401 [exp] 452 / 2e-154 AT2G03220 555 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.003G191301 [exp] 438 / 2e-149 AT2G03220 524 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.001G033800 [exp] 416 / 1e-140 AT2G03220 524 / 3e-180 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03254 [flax] [poplar] XG_FTase Xyloglucan fucosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10037152 pacid=23152579 polypeptide=Lus10037152 locus=Lus10037152.g ID=Lus10037152.BGIv1.0 annot-version=v1.0 ATGGATAAGAATATTGTTGATTCTTCAGATTGTAAATACGTTGTGTGGGTTTCCTACAGCGGGTTGGGAAACCGGATACTGTCCATAGCTGCAACATTCC TCTATGCTCTTTTAACAGATAGAGTGATGCTGGTTGATCAAGGGAAGGACATGAAGGACCTCTTCTGTGAGCCCTTTCCGGAGAATTCGTGGCTGCTGCC GCTGGATTTCCCGCTCACTAAGAAGTTTGATGGGTTCGGTCAAGGGCACGATCGATGTTACGGTAAGATGCTGAAGGATAGAGCTGTGAACTACTCAGCT AAGTCGGTTCCGTCTTATGTATATCTACATGTTGCACATGACTACGATGCTGAGGATAAGCTGTTCTTCTGTGACGACGATCAGTCTCTACTTGCCAAAG TCCCGTGGTTGGTGATGAGGACTGATAACTACTTCGTACCGTCGCTCTTCCTAATCGATGCTTATGAACACGAACTAGGGAAGATGTTTCCTGAGAAAGG AGCAGTCTTTCACCATGTAGGACGGTATCTTTTCCACCCGACAAATGTCGTGTGGGGACTCATCACACGGTACTACCGAACTTACCTAGCCAAGGCGGAT GCCAGTGTTGGAATTCAGGTTCGAGTTTTCGATCAGAGGCCTGGACCGTTCAAGCATGTAATGGAGCAGATCAGAGCTTGTACTTTGGATCAGAATCTCT TGCCTCATGTCGACTGGAACTCGAAAGCAACAGCCTTTGCATCATCCGTAAGTCCGAAATCGACAGCGATACTGTTGACATCGCTCAAGTCGGACTACTC AGACGATTTGAGGAACATGTACTGGGAGCATCCGACCACGACGGGAGAAGTGGTGGGGGTTTACCAACCGAGTCACGAGGAGTTCCAGCAGACGGAGAAG CGGATGCACAACCGAAAGGCGTGGGCCGAAATGTACCTCCTCAGTTTGACGGACAATTTGGTGACGAGTGCATGGTCAACTTTCGGATACGTTGCTCAAG GTCTAGGAGGGGTGAGGTCGTGGATCCTCACGAAGACTGAGAATGACACGGTTCCAGACCCACCGTGTCGACTGGCCATGTCGATGGACCCTTGCTTTCA TGCGCCTCCGTTGTATGACTGCAAGGAGAAGAGAGGGACGGATACCGGTGCGCTTGTCCCTCATGTGAAGCATTGTGAGGATGTAAGCTGGGGAGTCAAA GTGATTGATGCGGGACACGCTGAGATGTAA
AA sequence Show only first row Show all	>Lus10037152 pacid=23152579 polypeptide=Lus10037152 locus=Lus10037152.g ID=Lus10037152.BGIv1.0 annot-version=v1.0 MDKNIVDSSDCKYVVWVSYSGLGNRILSIAATFLYALLTDRVMLVDQGKDMKDLFCEPFPENSWLLPLDFPLTKKFDGFGQGHDRCYGKMLKDRAVNYSA KSVPSYVYLHVAHDYDAEDKLFFCDDDQSLLAKVPWLVMRTDNYFVPSLFLIDAYEHELGKMFPEKGAVFHHVGRYLFHPTNVVWGLITRYYRTYLAKAD ASVGIQVRVFDQRPGPFKHVMEQIRACTLDQNLLPHVDWNSKATAFASSVSPKSTAILLTSLKSDYSDDLRNMYWEHPTTTGEVVGVYQPSHEEFQQTEK RMHNRKAWAEMYLLSLTDNLVTSAWSTFGYVAQGLGGVRSWILTKTENDTVPDPPCRLAMSMDPCFHAPPLYDCKEKRGTDTGALVPHVKHCEDVSWGVK VIDAGHAEM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10037152 [exp]	0	1
AT1G62730			Terpenoid synthases superfamil...		Lus10024610 [exp]	8.7	0.7520
AT3G26618		ERF1-3	eukaryotic release factor 1-3 ...		Lus10032447 [exp]	11.5	0.7333
AT3G27030			unknown protein		Lus10032030 [exp]	20.5	0.7019
AT5G08490		SLG1	SLOW GROWTH 1, Tetratricopepti...		Lus10016943 [exp]	20.7	0.7177
AT3G18970		MEF20	mitochondrial editing factor ...		Lus10015912 [exp]	27.7	0.6676
AT3G18310			unknown protein		Lus10025089 [exp]	32.4	0.6860
AT1G61870		PPR336	pentatricopeptide repeat 336 (...		Lus10006769 [exp]	38.1	0.6757
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10036776 [exp]	42.5	0.6783
AT1G69530		ATHEXPALPHA1.2,...	EXPANSIN 1, expansin A1 (.1.2....		Lus10030449 [exp]	69.3	0.6444
AT2G43770			Transducin/WD40 repeat-like su...		Lus10002211 [exp]	71.5	0.6422

Compare expression of checked genes

Lus10037152 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.