Plant FIBer expression Database

Lus10037153 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G26761 395 / 8e-135 Arabinanase/levansucrase/invertase (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036775
[exp]
706 / 0 AT1G26761 441 / 1e-152 Arabinanase/levansucrase/invertase (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G089800
[exp]
459 / 4e-159 AT1G26761 469 / 4e-163 Arabinanase/levansucrase/invertase (.1)
PFAM info
Representative CDS sequence
>Lus10037153 pacid=23152522 polypeptide=Lus10037153 locus=Lus10037153.g ID=Lus10037153.BGIv1.0 annot-version=v1.0
ATGGAAATGGCGGCGGCATCATCACCATCAGCTTCAACGTTAAGAGCAGTAAGAAGCATCAACTCCGCAACTTCCATCACTCGCCGCCACTCAACTCTCT
TCAACAACCCAACAAAAAGACCCAATCTTTCCTCTCTCAGCCTTCGTTCTCGCTGTTCAACAAAGCCAGACACCAGCATTTCAGCCGGTCAGAACCGGAC
TCCCGATGAACAAGAACCCAATTCCGCCCCACTGAAGCAAAACGGTGACGTATCACTCCCCACTTCTCCTCTTTCATCGCCTTCTTCTTCGTGTAGAGTA
GGGTTAATCTTCGATCTAGGTCCGCCTGGTTCATGGGACAGCAGCCAAATTGGATCCCCGGTGGTGAAAAGGTTCCTAAGCGACGACGAGGAGAGATGGC
TAATGTGGTACCACGGTACCAATTCTGGCCAAGACCATTCTGATTCCTTAGGCTTAGCAGTTTCCAGCAATGGGGTTCACTGGGAGAGAGGGTTTGGCCA
CGTCGGCTCGGCTGCTGATGTGGGTCTGGTGATGAGCTCTAGCCAAGATTGGTGGTCGTTTGATACTGTCGGAATTCACCCTGGTGAAGTAGTTGTGATG
TCAAGCTCAATGGTGAAAGCTTCAAGTGCAGTCTACTGGCTTTACTACACTGGTATCAATTCCGAAAAGGTTGAATCTTTGAATGTTCTTAGGTCTCTAC
CTGGTTTAGCAATAAGTCAGGATGGGAGGCATTGGGCGAGAATTGAAGGTGATCACCACAGTGGAGCATTGTTTGATGTGGGTTGTGATGGAGAGTGGGA
TTCTCTGTTCATTGCTGGTCCACAAGTTGTGTTCCATGGGAGTGGAGATTTGAGAATGTACTATCACTCCTTTGATGCTGAAAAGAAACAATTCTGCATT
GGGATGGCAAGGTCGAGAGATGGGATCAAATGGGTGAAGCTAGGGACGATCCTAGGAGGAGGAAAGGTTGGTTCTTTCGACGAGTTCGGTGTTATGAATG
CAAGCGTCGTCAGGAACAAGAAAGATGGGAGCTACACGATGGCGTACGAAGGCGTTTCGAAGAATGGTGGTGGGGAGATGATCAAGAGCATTGGGATGGC
GGTTTCTGGTGATGGGTTGAGAGATTGGAAGAGGGTTCAAGAAGATGAGGGTGTTTTGATGAGAGGGTTAGAGGAGGAGGATGGAGGGTCATGGGATGGT
GGTGGAGTTGGGTCTCCTTGTTTGGTTCAGATGGATGGGGAAGTTGATGAATGGAGGCTGTATTACTCTGGAGTTGGTAGTGATGGAAGGACTGGAATTG
GAATGGCTGTCTCGAGTGGAAATGATGTAAGTTGTTTCAGAAAGTGGACCGGGTTGCCGTTTGTAAACCCATGA
AA sequence
>Lus10037153 pacid=23152522 polypeptide=Lus10037153 locus=Lus10037153.g ID=Lus10037153.BGIv1.0 annot-version=v1.0
MEMAAASSPSASTLRAVRSINSATSITRRHSTLFNNPTKRPNLSSLSLRSRCSTKPDTSISAGQNRTPDEQEPNSAPLKQNGDVSLPTSPLSSPSSSCRV
GLIFDLGPPGSWDSSQIGSPVVKRFLSDDEERWLMWYHGTNSGQDHSDSLGLAVSSNGVHWERGFGHVGSAADVGLVMSSSQDWWSFDTVGIHPGEVVVM
SSSMVKASSAVYWLYYTGINSEKVESLNVLRSLPGLAISQDGRHWARIEGDHHSGALFDVGCDGEWDSLFIAGPQVVFHGSGDLRMYYHSFDAEKKQFCI
GMARSRDGIKWVKLGTILGGGKVGSFDEFGVMNASVVRNKKDGSYTMAYEGVSKNGGGEMIKSIGMAVSGDGLRDWKRVQEDEGVLMRGLEEEDGGSWDG
GGVGSPCLVQMDGEVDEWRLYYSGVGSDGRTGIGMAVSSGNDVSCFRKWTGLPFVNP

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G26761 Arabinanase/levansucrase/inver... Lus10037153
[exp]
0 1
AT1G31830 Amino acid permease family pro... Lus10007593
[exp]
4.9 0.8666
AT2G36000 EMB3114 EMBRYO DEFECTIVE 3114, Mitocho... Lus10016971
[exp]
5.7 0.8933
AT2G36000 EMB3114 EMBRYO DEFECTIVE 3114, Mitocho... Lus10021297
[exp]
8.0 0.8705
AT3G59400 GUN4 GENOMES UNCOUPLED 4, enzyme bi... Lus10033819
[exp]
8.6 0.8889
AT2G28190 CZSOD2, CSD2 copper/zinc superoxide dismuta... Lus10021410
[exp]
9.5 0.8510
AT1G26761 Arabinanase/levansucrase/inver... Lus10036775
[exp]
11.6 0.8844
AT4G37660 Ribosomal protein L12/ ATP-dep... Lus10000093
[exp]
14.1 0.8318
AT3G02660 EMB2768 EMBRYO DEFECTIVE 2768, Tyrosyl... Lus10039064
[exp]
15.2 0.8610
AT2G30860 GLUTTR, ATGSTF7... glutathione S-transferase PHI ... Lus10004151
[exp]
15.8 0.8622
AT4G23820 Pectin lyase-like superfamily ... Lus10023101
[exp]
16.1 0.8237

Lus10037153 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.