Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16170 249 / 8e-80 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G11730 234 / 2e-74 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G68380 227 / 2e-71 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G10880 232 / 7e-71 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G25970 222 / 1e-69 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT3G21310 221 / 2e-69 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G10280 219 / 4e-68 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G68390 216 / 4e-67 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G73810 215 / 1e-66 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G51770 213 / 6e-66 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036774 [exp] 422 / 3e-148 AT5G16170 350 / 1e-118 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10005504 [exp] 236 / 9e-75 AT5G11730 499 / 1e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10005505 [exp] 236 / 9e-75 AT5G11730 499 / 1e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10024468 [exp] 235 / 2e-74 AT1G10280 524 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10002989 [exp] 234 / 4e-74 AT1G10280 525 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10007457 [exp] 235 / 9e-73 AT5G11730 489 / 1e-170 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10035828 [exp] 229 / 1e-71 AT1G68390 401 / 7e-138 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10036610 [exp] 225 / 3e-70 AT1G68390 404 / 3e-139 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10040972 [exp] 221 / 6e-69 AT1G10280 529 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G097700 [exp] 294 / 1e-97 AT5G16170 452 / 6e-159 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.015G045500 [exp] 259 / 7e-84 AT5G16170 394 / 2e-135 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.010G121900 [exp] 254 / 6e-82 AT5G11730 409 / 1e-141 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.006G233400 [exp] 241 / 3e-77 AT5G11730 557 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.010G121800 [exp] 237 / 2e-75 AT1G68390 399 / 1e-137 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.001G195900 [exp] 231 / 3e-73 AT3G21310 504 / 8e-180 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.003G001700 [exp] 228 / 6e-72 AT1G10280 543 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.015G045400 [exp] 226 / 3e-71 AT1G68390 390 / 2e-134 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.018G059100 [exp] 226 / 4e-71 AT5G11730 548 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.004G228100 [exp] 225 / 1e-70 AT1G10280 512 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF02485 [flax] [poplar] Branch Core-2/I-Branching enzyme
Representative CDS sequence Show only first row Show all	>Lus10037154 pacid=23152627 polypeptide=Lus10037154 locus=Lus10037154.g ID=Lus10037154.BGIv1.0 annot-version=v1.0 ATGGCTAATGAGCAACTTCACCACCAAATTTTGAAGCCATTTGGAGTCTATTACTCATCACATCTAGGCTTAAACCATATCCTCCAACTTCTTTTGTTTC TCGTGGGTATGTCGATCGGAACGGTCGCTCGTGGGTATCATGTCTCTACCTCATTCGAGTCTACGTCTACATTGATGAAACCACCAGTACTATCATTAGT ATCATATTCATTGCAACCACCACCGACCGAGGCCTCATCGGTAGTATCATATTCGTTGCAACCACCACCGACAGAGGCCTTGAGGTTGTCTTTGGAACTC GAAGAAGGAAAGACTACTCTTGTGCACAACATGAGTGACAATGAGTTGCTAGCAAGAGCATCCAACACTGTTCTCCAAGAAATGAAAGGAGGAATTCCAG AGTTAGCATTTTTGTTCTTGACTAAAGGCTCATTGCCCTTCTCTCCATTGTGGGAGAGGTTCTTCAATGGCCATGATGGCCTTTACTCCATCTATATCCA CCCCCATCCCTCTCATGTCGACTTGTGGCCTCATATATCTGTATTTTACGGTAGAAGGATTCCTAGTGAGAGAAGTAGCACGATGGTCGATGCAGAAAGA CACCTCTTAGCGAGTGCCCTACTAGACCCCTCTAACAAAAGGTTCATCCTACTCTCCGAATCATGCATCCCACTATTCGACTTCGCCACAACTTACCGAT ACCTCATGGACTCGAACCTAAGCTTCCTCAGCTCGTACGACGATCCACGAAGAGCAGGTCACGACCGTTACAACCATAGAATGTGGCCCACCATCAACGT TACCCAATGGAGGAAAGGGTCCCAGTGGTTCGAACTGAACCGGGACCTTGCTTCGAAGGTCGTGTCGGACCGGAAGTACTACAAGTTGTTTAGCGACCGT TGCGGCCGTCTATGCTACATGGATGAGCACTACATCCCTACATCCCTCGAGGCGGGGCCCACCCAAGAAGGTTCGTGTCAGGCAATATTACGGTTGGGTT GTTGA
AA sequence Show only first row Show all	>Lus10037154 pacid=23152627 polypeptide=Lus10037154 locus=Lus10037154.g ID=Lus10037154.BGIv1.0 annot-version=v1.0 MANEQLHHQILKPFGVYYSSHLGLNHILQLLLFLVGMSIGTVARGYHVSTSFESTSTLMKPPVLSLVSYSLQPPPTEASSVVSYSLQPPPTEALRLSLEL EEGKTTLVHNMSDNELLARASNTVLQEMKGGIPELAFLFLTKGSLPFSPLWERFFNGHDGLYSIYIHPHPSHVDLWPHISVFYGRRIPSERSSTMVDAER HLLASALLDPSNKRFILLSESCIPLFDFATTYRYLMDSNLSFLSSYDDPRRAGHDRYNHRMWPTINVTQWRKGSQWFELNRDLASKVVSDRKYYKLFSDR CGRLCYMDEHYIPTSLEAGPTQEGSCQAILRLGC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16170			Core-2/I-branching beta-1,6-N-...		Lus10037154 [exp]	0	1
					Lus10000586 [exp]	7.9	0.9166
AT1G68480	C2H2ZnF	JAG	JAGGED, C2H2 and C2HC zinc fin...		Lus10034329 [exp]	8.0	0.9204
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10036927 [exp]	11.0	0.9165
AT5G36000			unknown protein		Lus10004013 [exp]	16.2	0.9143
AT1G02335		GL22	germin-like protein subfamily ...		Lus10023350 [exp]	17.2	0.9158
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Lus10000747 [exp]	17.9	0.9101
AT5G44940			F-box/RNI-like superfamily pro...		Lus10000726 [exp]	19.2	0.9157
AT2G23945			Eukaryotic aspartyl protease f...		Lus10015487 [exp]	23.5	0.8712
AT1G37140		MCT1	MEI2 C-terminal RRM only like ...		Lus10018195 [exp]	23.7	0.9086
AT4G28365		AtENODL3	early nodulin-like protein 3 (...		Lus10039852 [exp]	26.3	0.9076

Compare expression of checked genes

Lus10037154 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.