Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26760 539 / 0 SDG35, ATXR1 SET domain protein 35 (.1) AT2G17900 52 / 6e-07 ASHR1, SDG37 ASH1-related 1, SET domain group 37 (.1) AT2G19640 52 / 6e-07 SDG39, ASHR2 SET DOMAIN PROTEIN 39, ASH1-related 2, ASH1-related protein 2 (.1.2) AT3G21820 52 / 7e-07 SDG36, ATXR2 SET DOMAIN PROTEIN 36, histone-lysine N-methyltransferase ATXR2 (.1) AT5G06620 50 / 2e-06 SDG38, ATXR4 SET domain protein 38 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031573 [exp] 56 / 6e-08 AT3G21820 603 / 0.0 SET DOMAIN PROTEIN 36, histone-lysine N-methyltransferase ATXR2 (.1) Lus10015102 [exp] 55 / 1e-07 AT3G21820 613 / 0.0 SET DOMAIN PROTEIN 36, histone-lysine N-methyltransferase ATXR2 (.1) Lus10026687 [exp] 54 / 3e-07 AT2G19640 400 / 3e-138 SET DOMAIN PROTEIN 39, ASH1-related 2, ASH1-related protein 2 (.1.2) Lus10004628 [exp] 52 / 5e-07 AT2G19640 399 / 4e-138 SET DOMAIN PROTEIN 39, ASH1-related 2, ASH1-related protein 2 (.1.2) Lus10029712 [exp] 52 / 1e-06 AT2G17900 615 / 0.0 ASH1-related 1, SET domain group 37 (.1) Lus10013535 [exp] 46 / 4e-05 AT5G06620 367 / 2e-127 SET domain protein 38 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G089500 [exp] 606 / 0 AT1G26760 646 / 0.0 SET domain protein 35 (.1) Potri.017G038700 [exp] 53 / 4e-07 AT3G21820 645 / 0.0 SET DOMAIN PROTEIN 36, histone-lysine N-methyltransferase ATXR2 (.1) Potri.005G173100 [exp] 52 / 6e-07 AT2G17900 657 / 0.0 ASH1-related 1, SET domain group 37 (.1) Potri.001G071700 [exp] 52 / 8e-07 AT2G19640 416 / 2e-144 SET DOMAIN PROTEIN 39, ASH1-related 2, ASH1-related protein 2 (.1.2) Potri.006G196566 [exp] 41 / 0.0008 AT5G06620 229 / 2e-75 SET domain protein 38 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00856 [flax] [poplar] SET SET domain CL0020 [flax] [poplar] TPR PF00515 [flax] [poplar] TPR_1 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Lus10037155 pacid=23152258 polypeptide=Lus10037155 locus=Lus10037155.g ID=Lus10037155.BGIv1.0 annot-version=v1.0 ATGGCCGAAGAAGACGACCACCATCCCGCTGCGGAAGAGCAGATGCAAGCGCTCAGACTCAAAGCCACAGAGCTCCTCCTCCGGGAAGAATGGCACGATT CCGTACAAGCCTACACCCAATTCATCACCCTCTGCCGATCCCACCTCCACGAATCTCCTCAAATCGCAAAGCTCCACAGATCCATCTGCCTAGCCCTCTC GAATCGAGCCGAAGCGAGATTCAGGCTGCGAGATTTCGATGAAGCCCTCCTTGATTGCGACCGGGCATTGGCTATCGAGCCCTCACATTTCAAGTCCCTG CTCTGCAAGGGCAGGATCTTGCTAAGCTTGAACAGGTACTCCTCGGCTTTGATCTGCTTCAAATTGGCTTTGCTCGATCTTCAATCGAATGGAAACGTCG AAACCCTAAACGGGTACATCGAGAAATGTAGAAAGCTTGAGTCCTTGTCGAGGACTGGAGCTCTCGATCTATCCGATTGGGTGCTGAGCGGGTTCAGGGG AAAGCAGCCGGAGCTCGCCGAGTACGTCGGACACGTTCGGATCGGTCGATCTGAGCTCAGTGGGAGAGGGCTTTTCGCTGCGAAGAATATGGATTCAGGG ACTTTAGTGCTGGTGACTAAAGCTGTAGCTACAGAGAGATGTATATTGTCGGATGAAGAATCGCCCGAGGATGCTCAATTAGTAATGTGGAAGAGTTTTG TCGATCAGGTAGCCGAATCAGCATCAAAATGCAGCAGGATCCGCCGGCTGATCAGTATGTTGTCGACTGGAGAAGAAGAATCCAGCCTCGAAATCCCCAA AACAGAGCTCTTCAGAACAAGAGAAACAGAGGTAAAATCAGCGGATTGCTGTAAATACGAATGCGAAATCGGATCGGAGAAGCTTCTGAGCATTCTGGAT GTGAACTCCTTAGTGGAGGATTCGATCTCGGCCAAAGTGTTGGGAAAGAACAGCGATTATTACGGAGTCGGATTGTGGGTTATGGCATCGTTCATCAACC ATTCCTGCACCCCGAATTCGCGACGAATCCACGTCGGAGACTACGTTCTGATCCATCTCTCCAGGGATGTGAAAGCAGGGGAGGAGCTGACATCGGCCTA CTTCGACGTGCTTTCTCCACTTTCGAAGCGGAAAGAGATGTCCTTGACATGGGGGTTCCAATGCCGGTGCCAGAGGTGTGAATTCGAGGACAGGTTTGGC GAAAAGGAGGTGGAAATCGATGATTTCGACATCGGTGGGACAATATTTCGGGTGGAGGAAGCGATGAGACAGCGGATGGTGAGAGGGAAGGAGAAAGGGT ACTTAAGAGCATCGCATTGGGGTGTTTATGAAGGAGGTTACGATGACAGGGCGGTGATGAGGAGGTGGGGGAGGAGGATTCCCGCGGCCGAGGCGGTGGT GGAGAGTGTTGCAGAGGCGGTGGGGAGTGATGAGAGATTGGTGAAGGTTCTGAGGGAGGAATTGAAGAGGAAGAGAAATGGAGGGGAATTGGAGATGGAG AGATCGTTGTTGTTGAAGATTGGGAAAGGTGTGTATGGGAAAGTTGTGAAGAAGCAAGCGCTGAGATCGTTGATTGGGTTTCAAGAACAGAAGAACAAGC TATTGATCAACAGATAG
AA sequence Show only first row Show all	>Lus10037155 pacid=23152258 polypeptide=Lus10037155 locus=Lus10037155.g ID=Lus10037155.BGIv1.0 annot-version=v1.0 MAEEDDHHPAAEEQMQALRLKATELLLREEWHDSVQAYTQFITLCRSHLHESPQIAKLHRSICLALSNRAEARFRLRDFDEALLDCDRALAIEPSHFKSL LCKGRILLSLNRYSSALICFKLALLDLQSNGNVETLNGYIEKCRKLESLSRTGALDLSDWVLSGFRGKQPELAEYVGHVRIGRSELSGRGLFAAKNMDSG TLVLVTKAVATERCILSDEESPEDAQLVMWKSFVDQVAESASKCSRIRRLISMLSTGEEESSLEIPKTELFRTRETEVKSADCCKYECEIGSEKLLSILD VNSLVEDSISAKVLGKNSDYYGVGLWVMASFINHSCTPNSRRIHVGDYVLIHLSRDVKAGEELTSAYFDVLSPLSKRKEMSLTWGFQCRCQRCEFEDRFG EKEVEIDDFDIGGTIFRVEEAMRQRMVRGKEKGYLRASHWGVYEGGYDDRAVMRRWGRRIPAAEAVVESVAEAVGSDERLVKVLREELKRKRNGGELEME RSLLLKIGKGVYGKVVKKQALRSLIGFQEQKNKLLINR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26760		SDG35, ATXR1	SET domain protein 35 (.1)		Lus10037155 [exp]	0	1
AT2G44190		EMB3116, EDE1, ...	QWRF domain containing 5, EMBR...		Lus10038729 [exp]	1.0	0.9843
AT1G65710			unknown protein		Lus10010952 [exp]	1.4	0.9794
AT1G16630			unknown protein		Lus10006845 [exp]	2.4	0.9790
AT3G47460		ATSMC2	Structural maintenance of chro...		Lus10027215 [exp]	4.5	0.9681
AT1G77720		PPK1	putative protein kinase 1 (.1)		Lus10028085 [exp]	4.9	0.9665
AT4G24710			P-loop containing nucleoside t...		Lus10019473 [exp]	5.2	0.9611
					Lus10037590 [exp]	5.3	0.9756
AT5G44040			unknown protein		Lus10032776 [exp]	6.0	0.9521
AT5G25090		AtENODL13	early nodulin-like protein 13 ...		Lus10026880 [exp]	6.0	0.9586
AT4G33400			Vacuolar import/degradation, V...		Lus10021729 [exp]	7.0	0.9660

Compare expression of checked genes

Lus10037155 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.