Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69500 847 / 0 CYP704B1 "cytochrome P450, family 704, subfamily B, polypeptide 1", cytochrome P450, family 704, subfamily B, polypeptide 1 (.1) AT2G45510 400 / 7e-135 CYP704A2 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) AT2G44890 372 / 1e-123 CYP704A1 "cytochrome P450, family 704, subfamily A, polypeptide 1", cytochrome P450, family 704, subfamily A, polypeptide 1 (.1.2) AT1G01600 365 / 2e-120 CYP86A4 "cytochrome P450, family 86, subfamily A, polypeptide 4", cytochrome P450, family 86, subfamily A, polypeptide 4 (.1) AT4G00360 357 / 3e-117 ATT1, CYP86A2 "cytochrome P450, family 86, subfamily A, polypeptide 2", ABERRANT INDUCTION OF TYPE THREE 1, cytochrome P450, family 86, subfamily A, polypeptide 2 (.1) AT1G63710 353 / 3e-116 CYP86A7 "cytochrome P450, family 86, subfamily A, polypeptide 7", cytochrome P450, family 86, subfamily A, polypeptide 7 (.1) AT2G45970 353 / 3e-116 CYP86A8, LCR LACERATA, "cytochrome P450, family 86, subfamily A, polypeptide 8", cytochrome P450, family 86, subfamily A, polypeptide 8 (.1) AT5G08250 335 / 2e-109 Cytochrome P450 superfamily protein (.1) AT5G23190 336 / 4e-109 CYP86B1 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) AT5G58860 327 / 3e-106 CYP86A1 "cytochrome P450, family 86, subfamily A, polypeptide 1", cytochrome P450, family 86, subfamily A, polypeptide 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036772 [exp] 1042 / 0 AT1G69500 863 / 0.0 "cytochrome P450, family 704, subfamily B, polypeptide 1", cytochrome P450, family 704, subfamily B, polypeptide 1 (.1) Lus10038896 [exp] 423 / 3e-143 AT2G45510 582 / 0.0 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) Lus10037999 [exp] 418 / 2e-140 AT2G45510 539 / 0.0 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) Lus10015018 [exp] 412 / 1e-138 AT2G45510 586 / 0.0 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) Lus10009232 [exp] 401 / 9e-130 AT2G45510 639 / 0.0 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) Lus10040687 [exp] 354 / 1e-116 AT5G58860 803 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 1", cytochrome P450, family 86, subfamily A, polypeptide 1 (.1) Lus10018217 [exp] 354 / 1e-116 AT5G58860 802 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 1", cytochrome P450, family 86, subfamily A, polypeptide 1 (.1) Lus10010193 [exp] 345 / 2e-112 AT5G23190 741 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Lus10017394 [exp] 342 / 2e-111 AT5G23190 739 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G088900 [exp] 885 / 0 AT1G69500 868 / 0.0 "cytochrome P450, family 704, subfamily B, polypeptide 1", cytochrome P450, family 704, subfamily B, polypeptide 1 (.1) Potri.014G072300 [exp] 429 / 7e-146 AT2G45510 563 / 0.0 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) Potri.014G072100 [exp] 426 / 7e-145 AT2G45510 563 / 0.0 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) Potri.014G072000 [exp] 396 / 4e-133 AT2G45510 706 / 0.0 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) Potri.014G085800 [exp] 357 / 2e-117 AT2G45970 866 / 0.0 LACERATA, "cytochrome P450, family 86, subfamily A, polypeptide 8", cytochrome P450, family 86, subfamily A, polypeptide 8 (.1) Potri.007G072100 [exp] 355 / 3e-116 AT5G23190 799 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Potri.012G131200 [exp] 353 / 6e-116 AT2G44890 511 / 7e-178 "cytochrome P450, family 704, subfamily A, polypeptide 1", cytochrome P450, family 704, subfamily A, polypeptide 1 (.1.2) Potri.009G043700 [exp] 342 / 8e-112 AT5G58860 827 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 1", cytochrome P450, family 86, subfamily A, polypeptide 1 (.1) Potri.005G092200 [exp] 342 / 4e-111 AT5G23190 788 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Potri.003G129100 [exp] 338 / 3e-110 AT1G63710 823 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 7", cytochrome P450, family 86, subfamily A, polypeptide 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10037157 pacid=23152464 polypeptide=Lus10037157 locus=Lus10037157.g ID=Lus10037157.BGIv1.0 annot-version=v1.0 ATGGAAGATGAAAATGGTATAGTGTCAATGTTCTTCATCCTAGCCGGCTTCATCGTGTCGTGGGTTTTCGTCCATCGATGGAACCAGAGGAACAACAAAG GTCCAAAGACATGGCCTCTTGTAGGGGCAGCCGTCGAGCAGCTGATGAACTATGACAGGATGCATGATTGGCTTGTCAATTACCTATCCGAGTCTCGGAC CGTCGTGGTCCCCATGCCATCCACAACCTACACTTACATTGCAGACCCTGCAAGTGTTGAACATGTTCTCAAGACCAACTTTGCCAACTATCCAAAGGGA GAGACTTACCATTCTTACATGGAAGTTCTGCTGGGAGATGGGATATTCAATGTTGATGGTGACTTGTGGAGGAAGCAAAGGAAGACTGCTAGTTTCGAGT TTGCTTCCAAGAATCTGAGGGATTTCAGTACTGTTGTGTTCAGAGAGTATAGCCTCAAGCTCTCCTCTATTCTCAGCCAAGCTTCTTTCAACAATGAAGC AGTGGATATGCAGGAACTGTTGATGAGGATGACTCTGGACTCCATATGCAAAGTAGGGTTTGGAGTTGAGATAGGAACTTTGGCTCCAAACCTGCCGGAC AACCAGTTTGCTCGGGCTTTCGATACTGCGAACATCATCGTTACACTTCGATTCATCGATCCATTGTGGAGGATCAAGAAGTTGTTCAATGTAGGCTCGG AAGCTCTGCTCGACAGGAGCATGAAGATCATTAATGACTTCACCTACACAGTGATTCGTCGAAGGAAAGCAGAACTCGAAGAAGCTCGAGCTACTGGCAA AGATAACAGCAAGGTGAAACATGACATATTGACAAGGTTCATTGAGCTAGGCGAAGATCCGGAAAGCAAAATGACAGACAAAAGCCTAAGAGATGTCGTT CTTAATTTCGTGATAGCTGGTCGGGACACGACAGCTACAACCCTTTCGTGGGCCGTGTACATGATAATGATGCATAAGGAAGTAGCCAAGAAGCTCTACA CGGAGCTCAAGGCTTTCGAGGCTGACAGGGCAAAGGAAGAGGACGCAACATTGGTTCTGTGTGATGATGTGGACGATATCGAATCGTTCAACCAAAGGGT AATGCAATATGCAGGGCTAATGAACTATGACTCGTTAGGGAAACTTCACTATCTCCATGCAATTATCACAGAGACACTTAGGCTGTACCCGGCAGTGCCT CAAGATCCCAAGGGAATTCTTGAGGATGATGTCTTACCGGATGGTACGAAGGTGAAAGCCGGAGGCATGGTCACTTATGTGCCGTATTCAATGGGGAGAA TGGAATATAACTGGGGACCTGATGCAGCTTTGTTCAAGCCAGAGAGATGGCTGAAAGATGGGATCTTTCAGAACTCATCTCCTTTCAAGTTTACTGCATT CCAAGCCGGGCCAAGAATCTGCCTGGGGAAAGACTCAGCATATCTCCAGATGAAGATGGCACTAGCCATCTTCTGCAGATTCTACAAGTTCAGCTTGGTG CCAAACCATCCAGTTCAATACCGAATGATGACGATTCTGTCAATGGCACATGGCCTCAAGCTGAAAAGTACTAGATGCTTGTAG
AA sequence Show only first row Show all	>Lus10037157 pacid=23152464 polypeptide=Lus10037157 locus=Lus10037157.g ID=Lus10037157.BGIv1.0 annot-version=v1.0 MEDENGIVSMFFILAGFIVSWVFVHRWNQRNNKGPKTWPLVGAAVEQLMNYDRMHDWLVNYLSESRTVVVPMPSTTYTYIADPASVEHVLKTNFANYPKG ETYHSYMEVLLGDGIFNVDGDLWRKQRKTASFEFASKNLRDFSTVVFREYSLKLSSILSQASFNNEAVDMQELLMRMTLDSICKVGFGVEIGTLAPNLPD NQFARAFDTANIIVTLRFIDPLWRIKKLFNVGSEALLDRSMKIINDFTYTVIRRRKAELEEARATGKDNSKVKHDILTRFIELGEDPESKMTDKSLRDVV LNFVIAGRDTTATTLSWAVYMIMMHKEVAKKLYTELKAFEADRAKEEDATLVLCDDVDDIESFNQRVMQYAGLMNYDSLGKLHYLHAIITETLRLYPAVP QDPKGILEDDVLPDGTKVKAGGMVTYVPYSMGRMEYNWGPDAALFKPERWLKDGIFQNSSPFKFTAFQAGPRICLGKDSAYLQMKMALAIFCRFYKFSLV PNHPVQYRMMTILSMAHGLKLKSTRCL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69500		CYP704B1	"cytochrome P450, family 704, ...		Lus10037157 [exp]	0	1
AT2G23770			protein kinase family protein ...		Lus10021889 [exp]	2.2	0.8900
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10042994 [exp]	2.8	0.8753
AT5G07830		ATGUS2	glucuronidase 2 (.1)		Lus10004664 [exp]	4.7	0.8435
AT5G59090		ATSBT4.12	subtilase 4.12 (.1.2.3)		Lus10040253 [exp]	10.0	0.8456
AT3G14130			Aldolase-type TIM barrel famil...		Lus10013173 [exp]	11.2	0.8627
AT1G49180			protein kinase family protein ...		Lus10020855 [exp]	12.6	0.8651
AT3G60330		AHA7	H\(+\)-ATPase 7, H\(+\)-ATPase...		Lus10042905 [exp]	13.9	0.8759
AT5G13150		ATEXO70C1	exocyst subunit exo70 family p...		Lus10037048 [exp]	14.4	0.8814
AT5G67380		ATCKA1, CKA1	casein kinase alpha 1 (.1.2)		Lus10032849 [exp]	15.3	0.8689
AT5G64500			Major facilitator superfamily ...		Lus10002935 [exp]	16.4	0.8490

Compare expression of checked genes

Lus10037157 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.