Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14150 174 / 2e-55 PnsL2, PQL2, PQL1 PsbQ-like 1, Photosynthetic NDH subcomplex L 2, PsbQ-like 2 (.1.2) AT4G05180 56 / 2e-09 PSII-Q, PSBQ, PSBQ-2 photosystem II subunit Q-2 (.1) AT4G21280 52 / 3e-08 PSBQ, PSBQA, PSBQ-1 PHOTOSYSTEM II SUBUNIT Q-1, photosystem II subunit QA (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007627 [exp] 57 / 5e-10 AT4G05180 281 / 7e-97 photosystem II subunit Q-2 (.1) Lus10018385 [exp] 57 / 6e-10 AT4G05180 275 / 3e-94 photosystem II subunit Q-2 (.1) Lus10020071 [exp] 56 / 2e-09 AT4G05180 282 / 2e-97 photosystem II subunit Q-2 (.1) Lus10006751 [exp] 51 / 1e-07 AT4G05180 271 / 7e-89 photosystem II subunit Q-2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G166800 [exp] 180 / 1e-57 AT1G14150 195 / 9e-64 PsbQ-like 1, Photosynthetic NDH subcomplex L 2, PsbQ-like 2 (.1.2) Potri.004G031500 [exp] 57 / 7e-10 AT4G05180 269 / 1e-91 photosystem II subunit Q-2 (.1) Potri.011G031300 [exp] 51 / 7e-08 AT4G05180 261 / 2e-88 photosystem II subunit Q-2 (.1) Potri.008G088750 [exp] 47 / 1e-07 AT1G14150 59 / 7e-13 PsbQ-like 1, Photosynthetic NDH subcomplex L 2, PsbQ-like 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05757 [flax] [poplar] PsbQ Oxygen evolving enhancer protein 3 (PsbQ)
Representative CDS sequence Show only first row Show all	>Lus10037159 pacid=23152573 polypeptide=Lus10037159 locus=Lus10037159.g ID=Lus10037159.BGIv1.0 annot-version=v1.0 ATGAGCTGCAACTCCTTCACCAACCCTCCCACAATCCTCCATTCAAAGCCATCCAACAACAACAACAACTCATCCCCCAAACCCACCACCAGTTCAACAG CCATTATCACCACAGACAGAAGAAAGCTAGTGACAACATTCCTAGCCACAACTTCATTAGCAGCACTACCACAGCTGAACCAGCCAGCATCAGCAGCTCC GGCTCAGACCTGGGGCGTCCGTTCGCACATCTTTGAACGCTTCTTCCAGCCCGACCTCTCCCCCGAGGAATCAGCGGAGAGGATTCGACAGACAGCCGAA GGGCTCCACAGCATTAGGGACATGATGGATGCCATGGCCTGGAGGTTTATCTTGTTCTACATCAGGCTGAAACAGGACTACCTTGATAAGGACTTGAAGA TTGCAATGGCGGTTGTCCCTCAAGGAAAGAGGAAAGACTATGTTGTTAAGGCCAACAAGCTCGTGGAGAATATGGCTCTGCTTGATAAGTATATACGGTC ACCGAAGGTGTACGAATCATATCTCTACTACGAGAAGACCCTCGATTCGATCGATGAAGTTGTCCAGATGTTGGCATAA
AA sequence Show only first row Show all	>Lus10037159 pacid=23152573 polypeptide=Lus10037159 locus=Lus10037159.g ID=Lus10037159.BGIv1.0 annot-version=v1.0 MSCNSFTNPPTILHSKPSNNNNNSSPKPTTSSTAIITTDRRKLVTTFLATTSLAALPQLNQPASAAPAQTWGVRSHIFERFFQPDLSPEESAERIRQTAE GLHSIRDMMDAMAWRFILFYIRLKQDYLDKDLKIAMAVVPQGKRKDYVVKANKLVENMALLDKYIRSPKVYESYLYYEKTLDSIDEVVQMLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14150		PnsL2, PQL2, PQ...	PsbQ-like 1, Photosynthetic ND...		Lus10037159 [exp]	0	1
AT5G64380			Inositol monophosphatase famil...		Lus10007061 [exp]	1.4	0.9467
AT1G74730			Protein of unknown function (D...		Lus10004269 [exp]	2.2	0.9504
AT3G09050			unknown protein		Lus10027783 [exp]	3.2	0.9308
AT5G38410			Ribulose bisphosphate carboxyl...		Lus10033558 [exp]	6.2	0.9431
AT5G38410			Ribulose bisphosphate carboxyl...		Lus10017597 [exp]	7.2	0.9421
AT3G23700			Nucleic acid-binding proteins ...		Lus10022587 [exp]	12.0	0.9329
AT2G12400			unknown protein		Lus10008813 [exp]	12.2	0.9179
AT5G08410		FTRA2	ferredoxin/thioredoxin reducta...		Lus10013448 [exp]	12.6	0.9391
AT1G51100			unknown protein		Lus10040511 [exp]	13.5	0.9296
AT5G66190		ATLFNR1	ferredoxin-NADP\(+\)-oxidoredu...		Lus10041904 [exp]	13.9	0.9359

Compare expression of checked genes

Lus10037159 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.