Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14160 214 / 7e-71 Uncharacterised protein family (UPF0497) (.1) AT5G15290 175 / 8e-56 CASP5 Casparian strip membrane domain protein 5, Uncharacterised protein family (UPF0497) (.1) AT3G11550 137 / 2e-40 CASP2 Casparian strip membrane domain protein 2, Uncharacterised protein family (UPF0497) (.1) AT2G27370 137 / 3e-40 CASP3 Casparian strip membrane domain protein 3, Uncharacterised protein family (UPF0497) (.1) AT2G36100 136 / 3e-40 CASP1 Casparian strip membrane domain protein 1, Uncharacterised protein family (UPF0497) (.1) AT5G06200 130 / 4e-38 CASP4 Casparian strip membrane domain protein 4, Uncharacterised protein family (UPF0497) (.1) AT1G03700 86 / 4e-21 Uncharacterised protein family (UPF0497) (.1) AT4G03540 78 / 4e-18 Uncharacterised protein family (UPF0497) (.1) AT3G06390 76 / 3e-17 Uncharacterised protein family (UPF0497) (.1) AT5G44550 74 / 4e-16 Uncharacterised protein family (UPF0497) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036770 [exp] 237 / 7e-81 AT1G14160 119 / 2e-34 Uncharacterised protein family (UPF0497) (.1) Lus10033007 [exp] 209 / 4e-69 AT5G15290 216 / 3e-72 Casparian strip membrane domain protein 5, Uncharacterised protein family (UPF0497) (.1) Lus10015375 [exp] 194 / 4e-63 AT5G15290 219 / 1e-73 Casparian strip membrane domain protein 5, Uncharacterised protein family (UPF0497) (.1) Lus10021333 [exp] 142 / 1e-42 AT3G11550 246 / 1e-83 Casparian strip membrane domain protein 2, Uncharacterised protein family (UPF0497) (.1) Lus10017009 [exp] 144 / 2e-39 AT3G11540 1356 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10029409 [exp] 130 / 4e-38 AT3G11550 234 / 9e-79 Casparian strip membrane domain protein 2, Uncharacterised protein family (UPF0497) (.1) Lus10004205 [exp] 130 / 6e-38 AT3G11550 232 / 8e-78 Casparian strip membrane domain protein 2, Uncharacterised protein family (UPF0497) (.1) Lus10017008 [exp] 125 / 6e-36 AT2G27370 228 / 5e-76 Casparian strip membrane domain protein 3, Uncharacterised protein family (UPF0497) (.1) Lus10021332 [exp] 121 / 2e-34 AT2G36100 229 / 1e-76 Casparian strip membrane domain protein 1, Uncharacterised protein family (UPF0497) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G032300 [exp] 199 / 3e-65 AT5G15290 207 / 1e-68 Casparian strip membrane domain protein 5, Uncharacterised protein family (UPF0497) (.1) Potri.008G088700 [exp] 164 / 2e-51 AT1G14160 163 / 3e-51 Uncharacterised protein family (UPF0497) (.1) Potri.006G208800 [exp] 137 / 7e-41 AT5G06200 201 / 7e-66 Casparian strip membrane domain protein 4, Uncharacterised protein family (UPF0497) (.1) Potri.016G075400 [exp] 137 / 1e-40 AT5G06200 179 / 2e-57 Casparian strip membrane domain protein 4, Uncharacterised protein family (UPF0497) (.1) Potri.009G160000 [exp] 126 / 4e-36 AT2G27370 146 / 2e-43 Casparian strip membrane domain protein 3, Uncharacterised protein family (UPF0497) (.1) Potri.016G075300 [exp] 103 / 1e-27 AT5G06200 162 / 2e-50 Casparian strip membrane domain protein 4, Uncharacterised protein family (UPF0497) (.1) Potri.013G131700 [exp] 86 / 8e-21 AT1G03700 159 / 9e-50 Uncharacterised protein family (UPF0497) (.1) Potri.019G100300 [exp] 82 / 1e-19 AT1G03700 150 / 6e-47 Uncharacterised protein family (UPF0497) (.1) Potri.004G043300 [exp] 81 / 2e-19 AT4G03540 103 / 2e-28 Uncharacterised protein family (UPF0497) (.1) Potri.001G442300 [exp] 76 / 6e-17 AT5G44550 173 / 4e-55 Uncharacterised protein family (UPF0497) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0396 [flax] [poplar] Marvel-like PF04535 [flax] [poplar] DUF588 Domain of unknown function (DUF588)
Representative CDS sequence Show only first row Show all	>Lus10037160 pacid=23152395 polypeptide=Lus10037160 locus=Lus10037160.g ID=Lus10037160.BGIv1.0 annot-version=v1.0 ATGAAGCAGCCAGAGCCAGCATCAGCGGTAGAGTTAGCACCACCAGGAGTTGGAGATGATCAAACTTCTTCCCCATCTCGAAACCGGGAAGTGATGAAGC GAGGGATCTCGATACTAGACCTCATGGCAAGGTTTTTAGCAGCTGCTGGGACACTAGGGAGTGCCATAGCCATGGGAACCACAAATGAAACAGTAACAGT TGCAGCTTTCTCCCAGCTTCTCCAGTTCAACACCAAGTTCAACGATCTTCCTGTCTTCACGTTCTTTGTGGTAGCCAACTCTGTTGTTGGTAGCTACCTT GTGCTTTCATTCCCCATTTCAGTCTTCCACATCATAAGTAGCTCAGCAAAAACAAGCAGGATCATCTTGGTTAGCTTAGACACGGTTATGCTGTCAATCC TGACAGCAGGAGCTTCATCAGCAGCAGCCATGGTTTACTTGGCGCACAAGGGGAATGCAAATGCTAACTGGTCAGCAATCTGCCAGCAGTTCGATAATTT CTGCAACCGAGTTTCTGGATCCCTCATAGGCTCTTTCGTAGCCATAGTCTTGTTCATCATCATGGTCATTGCTTCTTCCGTGTCCCTCTCTCGACATTGA
AA sequence Show only first row Show all	>Lus10037160 pacid=23152395 polypeptide=Lus10037160 locus=Lus10037160.g ID=Lus10037160.BGIv1.0 annot-version=v1.0 MKQPEPASAVELAPPGVGDDQTSSPSRNREVMKRGISILDLMARFLAAAGTLGSAIAMGTTNETVTVAAFSQLLQFNTKFNDLPVFTFFVVANSVVGSYL VLSFPISVFHIISSSAKTSRIILVSLDTVMLSILTAGASSAAAMVYLAHKGNANANWSAICQQFDNFCNRVSGSLIGSFVAIVLFIIMVIASSVSLSRH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14160			Uncharacterised protein family...		Lus10037160 [exp]	0	1
AT1G47710			Serine protease inhibitor (SER...		Lus10005089 [exp]	1.0	0.9878
AT1G14160			Uncharacterised protein family...		Lus10036770 [exp]	3.5	0.9728
AT1G11260		ATSTP1, STP1	sugar transporter 1 (.1)		Lus10042516 [exp]	3.5	0.9814
AT5G41810			unknown protein		Lus10003901 [exp]	3.5	0.9823
AT5G39820	NAC	ANAC094	NAC domain containing protein ...		Lus10007263 [exp]	4.5	0.9736
AT5G47720			Thiolase family protein (.1.2....		Lus10039109 [exp]	5.5	0.9757
AT1G70460		AtPERK13, RHS10	proline-rich extensin-like rec...		Lus10030879 [exp]	5.7	0.9742
AT3G16990			Haem oxygenase-like, multi-hel...		Lus10037751 [exp]	5.7	0.9775
AT2G44180		MAP2A	methionine aminopeptidase 2A (...		Lus10027121 [exp]	5.8	0.9640
AT5G65790	MYB	AtMYB68	myb domain protein 68 (.1)		Lus10028248 [exp]	6.0	0.9741

Compare expression of checked genes

Lus10037160 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.