Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53150 300 / 1e-88 DNAJ heat shock N-terminal domain-containing protein (.1) AT2G05230 251 / 2e-71 DNAJ heat shock N-terminal domain-containing protein (.1) AT2G05250 251 / 2e-71 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G27240 219 / 2e-58 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G18740 203 / 6e-57 Domain of unknown function (DUF3444) (.1) AT3G04960 199 / 7e-55 Domain of unknown function (DUF3444) (.1), Domain of unknown function (DUF3444) (.2), Domain of unknown function (DUF3444) (.3), Domain of unknown function (DUF3444) (.4) AT5G18730 196 / 1e-53 unknown protein AT3G06340 189 / 6e-50 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) AT3G05110 177 / 2e-48 Domain of unknown function (DUF3444) (.1) AT3G04980 185 / 1e-47 DNAJ heat shock N-terminal domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036769 [exp] 1895 / 0 AT5G27240 320 / 2e-92 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10001726 [exp] 719 / 0 AT5G27240 315 / 9e-94 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10004129 [exp] 672 / 0 AT5G27240 265 / 4e-82 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10018975 [exp] 322 / 4e-95 AT5G27240 225 / 3e-61 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10028842 [exp] 278 / 6e-81 AT5G53150 498 / 3e-167 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10042540 [exp] 271 / 9e-77 AT5G27240 210 / 4e-56 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10012795 [exp] 210 / 4e-56 AT5G18750 311 / 2e-94 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10033983 [exp] 202 / 5e-53 AT5G27240 557 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10014927 [exp] 181 / 2e-47 AT5G53150 535 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G043200 [exp] 708 / 0 AT5G27240 416 / 4e-127 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.013G029500 [exp] 705 / 0 AT3G04980 524 / 6e-167 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.010G018800 [exp] 417 / 6e-130 AT5G18750 446 / 3e-142 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.008G196201 [exp] 192 / 4e-54 AT3G06340 249 / 6e-77 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) Potri.012G001100 [exp] 183 / 1e-47 AT5G53150 570 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.015G020200 [exp] 181 / 5e-47 AT5G53150 574 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.008G196301 [exp] 159 / 7e-45 AT5G18730 158 / 1e-46 unknown protein Potri.003G171200 [exp] 169 / 5e-43 AT5G53150 311 / 6e-95 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.001G057200 [exp] 164 / 1e-41 AT5G53150 318 / 1e-97 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.015G097500 [exp] 162 / 8e-41 AT5G53150 487 / 4e-162 DNAJ heat shock N-terminal domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain CL0392 [flax] [poplar] PF11926 [flax] [poplar] DUF3444 Domain of unknown function (DUF3444)
Representative CDS sequence Show only first row Show all	>Lus10037161 pacid=23152396 polypeptide=Lus10037161 locus=Lus10037161.g ID=Lus10037161.BGIv1.0 annot-version=v1.0 ATGGAAGCTAACAAAGAGGAGGCGGTAAGAGCAAGGGAACTTGCAGAGAAGAAATTGCTAATGGGTGACTACGAAGGGGCGCGCAAAATGGCATTGAAGG CTCAGAAACTCTATCCCGACATTGAGAACTTGTCCCAGTTGTTAGTCGTTTGTAACGTCCATTGCTCTGCAGCTAGCAAGCTAAGTGGTTCAGTCTCTGA TTGGTATGCGATTCTTCAGATTGATCGCTTTTCAGATGAGGCAGTCATTCTGAAGCAGTACAAAAAGCTTGCGCTTTCCCTTCATCCGGACAAGAACAAG TATGCTGGTGCAGAAGCTGCTTTCAAGCTCATTGGAGAAGCAAAGAGGGAACTTACAGACCCGAAAAAGCGTGCTTTGTTCGATGCAAAATGTAGAGTTT TGGATAAACCAGCTGCACCTAAAGTGACAGCAAACAGTAAAGGGGCCGCAACGAAACCACCTGCCGCGTCTCATCAGAACACTAGAGGGCATACTTCTCA ACAGACTCGACCAGAACGTGTGGGATCGAATTCTCATGGGCAGCCAGAAGAAACGTTCTGGACCTGCTGCCAATCTTGTAAGGTGAAGTTTCAGTATCAC GCACAGTACCGAAATAAGATGTTGAAATGTCATATTTGCGATCAGCATTTTGTTGCGCGGGAGGTGGTTGTGACGCGTGTACCACCTCGATCTGATTATT TTGGCTCTGCAAGTCATCCAGGAGTTAATATTCAAGGGTCTGGTAATGTTGCTCCGCAAAGTAACGGTGGAAAGTCCACTTTTGCTGGTGTAGAGTTAAG ACCTGATGGTGGAAAAGTTACAAGTGTTAACGGGAAGCCTAAATCAAAAGAGTCAAAGGCAGGTAATGTTGGTGGAATTTACAACTATTTTAAACCGCAA GTGAAAGCTGATGAGCAAGTATCTGGTGGAACTGGTAAAAAATCTGGTGTTGACATGAGTGCTGCTGGAAGGCCTTCAAGATCCTCAAGTAAAAAGCGGC CGAATACTCGTGAAGAGATTTCTGGTGATGATGAATTTGTTGCTCCTCCATCAAAAAGATCGCAAGCGAAAAAATCATCTGCTGGCTATGGACAAGAGAT GGAGAAACCATCTGGACCAAAGCAAGAACCTGAGCGTTATACTGAAGAAATTCTACACGGAAAGACAAGTAGAGCCGAAGGTATTCAGGCCAGTGAAGAT GAAGTTTCCATTTCTGATAAACCGGAAGCAAATGGTTCGGACAGTGGTCGTGAAACAGAACTCGATCAAGAACATATTCAGTGTCCTGATGCAGAGTTCA CAGACTTTGAAAAAGACAAGTCTGAAAATTGTTTCAAAGTTAATCAAGTATGGGCTTTGTATGATGAAATAGATAGCATGCCGAGATTTTATGCACGGGT CAAGAAAGTTCTCTCACCTGGTTTTAAGCTGCTGATTACTTGGCTGGAAGCTTCTCCAGGTACCAAGGAGGAGGAATGCTGGGAAGAAGCTGATTTACCA ATTTCGTGTGGTACATTTGTTAACGGGGAATCTGACAAAATCGGAGACCATCTCATGTTTTCGCATCGAATGGATTGTAGAAGAGGAAAGGGGAAAGGAA CTTTTGTAATCTACCCTAAGAAGGGGGAGACCTGGGCACTATTCAAGGATTGGGATATAAAATGGGGGGCTGAACCAGACAAGCATAAACCACCATATTG CTTTGATTTCGTCGAGATTCTATCAGATTTTACGGAGGAATCTGGTGTTATGGTTGCTTGTCTGGACAAGGTGGAAGGGTTCGTTAGCATCTTTGAGAGA TCCCCCAGCCATGAAAAAAAGGTTACCTCTTTTCGCATAAAACGCTCTGAGTTGTACAGATTTTCACATCGCATTCCCTCTCGCGAGATGACTGGGATGG AAAGTCTAGGTGTTCCTGTTTCTTTCGAACTCGATACAGCTGCACTACCTAGCAATCTCTATAGCCGCGATGACATCAAACAACAAGCACAGGCAGAGGA GGTACACTGTAGTAAGGAAGCAACTAGTTCGAAACCTGCAAGAACCCCTCAAGAATCACACGCTTCGAGGATAAACGAGATTAGTCCGGAAGGATCGGTG GTTTGTGGGTTATCGGCAGGACTTCCAAGTGATATACACATTGAGGATGATCCCAAGGGGAAGGATGAACAGGTTGAATATGGGGAACCTGTGTTATCAA CACCGAGAAGATCTACTAGGGGCTTGAGAAAGGGAAATGGTAATGCTGATGTAAATGCAAACCAGCCAGTTATAGTAGAGGGCGGTGCCTGGAAGCGGAA GGATCCTAGTGCAAGTACTGGAAACCATGCTCAAACAAGTGGTTTGTCCGAAAGCGATTCTGATTTCAATATCAAATCTCGTAAGCCAGGTGGAAGTTCA GCATGCCTTGCAGGAGGAATGCAGGTGTCCTCTGCCAAGTTGAAAGTAGAAGCAGTAAAATACGATTTCAACAAGGAAAGGTCTGCAGGAAAGTTTAAAA CCGGTCAGGTGTGGGCGATTTTCAGCAAAGAAGCAGGGATGATGCCGAAGGATTATGCCGTGGTGAAGAAGATTGAATATGCTCCTACTTTGACGATGCA TGTGGCTATGCTTGAGTCGCCATCTTATCCAATCGGGACAGCTAGACCTTTTAGTTGCGGTACATTCACAGAAGGTAGTAAAACAACAGCGGTTTCGGTT GCTCAGTTTTCGCATCTGGTGAGTGCTAGGGCTACTGGTAAGAACAGGTACTTGATATGGCCTACGGAAGGTGAGATATGGGCGGTGTACAAGAGCTCGG AGTCGGAGCAATGTGATGGAGATGGAGAATTCGAGATTGTCAAGGTGCTTGAGGGGAAAGATGAGAGTGTAAAGGTCGTGACTTTGACGGCGTTGACTAA ACGCAGTGGACTTAAATCGTTCTACAAGGCTCCCCAAAGTCAACGACTCAAAGTCGGCGAAATGGAGATTCCTTTCAAGGAGATTAACAGATTCTCTCAT CGGTGCGCAGCCTACTATCATGAAGCTAACGGGTGTTGGGAGGTTGAATCTTCATCAGTTACGTGTCAAGTCACCGAGTTGGAATGA
AA sequence Show only first row Show all	>Lus10037161 pacid=23152396 polypeptide=Lus10037161 locus=Lus10037161.g ID=Lus10037161.BGIv1.0 annot-version=v1.0 MEANKEEAVRARELAEKKLLMGDYEGARKMALKAQKLYPDIENLSQLLVVCNVHCSAASKLSGSVSDWYAILQIDRFSDEAVILKQYKKLALSLHPDKNK YAGAEAAFKLIGEAKRELTDPKKRALFDAKCRVLDKPAAPKVTANSKGAATKPPAASHQNTRGHTSQQTRPERVGSNSHGQPEETFWTCCQSCKVKFQYH AQYRNKMLKCHICDQHFVAREVVVTRVPPRSDYFGSASHPGVNIQGSGNVAPQSNGGKSTFAGVELRPDGGKVTSVNGKPKSKESKAGNVGGIYNYFKPQ VKADEQVSGGTGKKSGVDMSAAGRPSRSSSKKRPNTREEISGDDEFVAPPSKRSQAKKSSAGYGQEMEKPSGPKQEPERYTEEILHGKTSRAEGIQASED EVSISDKPEANGSDSGRETELDQEHIQCPDAEFTDFEKDKSENCFKVNQVWALYDEIDSMPRFYARVKKVLSPGFKLLITWLEASPGTKEEECWEEADLP ISCGTFVNGESDKIGDHLMFSHRMDCRRGKGKGTFVIYPKKGETWALFKDWDIKWGAEPDKHKPPYCFDFVEILSDFTEESGVMVACLDKVEGFVSIFER SPSHEKKVTSFRIKRSELYRFSHRIPSREMTGMESLGVPVSFELDTAALPSNLYSRDDIKQQAQAEEVHCSKEATSSKPARTPQESHASRINEISPEGSV VCGLSAGLPSDIHIEDDPKGKDEQVEYGEPVLSTPRRSTRGLRKGNGNADVNANQPVIVEGGAWKRKDPSASTGNHAQTSGLSESDSDFNIKSRKPGGSS ACLAGGMQVSSAKLKVEAVKYDFNKERSAGKFKTGQVWAIFSKEAGMMPKDYAVVKKIEYAPTLTMHVAMLESPSYPIGTARPFSCGTFTEGSKTTAVSV AQFSHLVSARATGKNRYLIWPTEGEIWAVYKSSESEQCDGDGEFEIVKVLEGKDESVKVVTLTALTKRSGLKSFYKAPQSQRLKVGEMEIPFKEINRFSH RCAAYYHEANGCWEVESSSVTCQVTELE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27240			DNAJ heat shock N-terminal dom...		Lus10037161 [exp]	0	1
AT3G42170			BED zinc finger ;hAT family di...		Lus10032337 [exp]	6.5	0.9193
AT5G55820		WYR	WYRD, unknown protein		Lus10022519 [exp]	14.8	0.9066
AT5G53480			ARM repeat superfamily protein...		Lus10041453 [exp]	19.6	0.8993
AT5G23880		ATCPSF100, EMB1...	ENHANCED SILENCING PHENOTYPE 5...		Lus10035061 [exp]	20.2	0.8907
AT5G06680		ATSPC98, SPC98,...	ARABIDOPSIS THALIANA GAMMA TUB...		Lus10029296 [exp]	23.2	0.8740
AT5G55830			Concanavalin A-like lectin pro...		Lus10016620 [exp]	23.4	0.8984
AT5G07900			Mitochondrial transcription te...		Lus10002883 [exp]	24.1	0.8552
AT4G33400			Vacuolar import/degradation, V...		Lus10021729 [exp]	26.3	0.8976
AT1G09770	MYB	ATCDC5, AtMYBCD...	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10043452 [exp]	27.4	0.8574
AT1G56110		NOP56	homolog of nucleolar protein N...		Lus10021096 [exp]	27.7	0.8909

Compare expression of checked genes

Lus10037161 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.