Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69523 268 / 4e-84 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G69526 266 / 2e-83 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT1G69520 219 / 8e-67 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G64130 102 / 1e-25 cAMP-regulated phosphoprotein 19-related protein (.1.2.3) AT1G14180 105 / 9e-25 RING/U-box superfamily protein (.1.2) AT1G69510 96 / 3e-23 cAMP-regulated phosphoprotein 19-related protein (.1.2.3) AT5G48030 94 / 6e-20 GFA2 gametophytic factor 2 (.1) AT4G16146 73 / 2e-15 cAMP-regulated phosphoprotein 19-related protein (.1) AT1G28210 75 / 4e-14 ATJ1 DNAJ heat shock family protein (.1.2) AT5G18260 73 / 1e-13 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036766 [exp] 373 / 1e-124 AT1G69523 246 / 2e-80 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10036764 [exp] 310 / 2e-100 AT1G14180 134 / 2e-37 RING/U-box superfamily protein (.1.2) Lus10036768 [exp] 146 / 4e-41 AT5G64130 116 / 6e-35 cAMP-regulated phosphoprotein 19-related protein (.1.2.3) Lus10035855 [exp] 138 / 9e-35 AT5G48030 524 / 0.0 gametophytic factor 2 (.1) Lus10036638 [exp] 135 / 2e-33 AT5G48030 516 / 0.0 gametophytic factor 2 (.1) Lus10030448 [exp] 122 / 6e-32 AT1G69510 123 / 1e-36 cAMP-regulated phosphoprotein 19-related protein (.1.2.3) Lus10026615 [exp] 122 / 7e-32 AT1G69510 123 / 1e-36 cAMP-regulated phosphoprotein 19-related protein (.1.2.3) Lus10027634 [exp] 125 / 2e-30 AT5G48030 494 / 8e-174 gametophytic factor 2 (.1) Lus10011934 [exp] 118 / 4e-28 AT5G48030 499 / 8e-176 gametophytic factor 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G088500 [exp] 345 / 3e-113 AT1G69523 315 / 4e-107 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.010G167000 [exp] 108 / 3e-27 AT1G69510 104 / 4e-29 cAMP-regulated phosphoprotein 19-related protein (.1.2.3) Potri.017G102700 [exp] 105 / 7e-27 AT5G64130 159 / 1e-51 cAMP-regulated phosphoprotein 19-related protein (.1.2.3) Potri.004G111900 [exp] 105 / 9e-27 AT5G64130 152 / 4e-49 cAMP-regulated phosphoprotein 19-related protein (.1.2.3) Potri.001G271300 [exp] 111 / 8e-26 AT5G48030 530 / 0.0 gametophytic factor 2 (.1) Potri.009G065500 [exp] 109 / 3e-25 AT5G48030 504 / 1e-177 gametophytic factor 2 (.1) Potri.008G108201 [exp] 79 / 1e-17 AT4G16146 103 / 4e-30 cAMP-regulated phosphoprotein 19-related protein (.1) Potri.010G141300 [exp] 74 / 5e-16 AT4G16146 105 / 3e-31 cAMP-regulated phosphoprotein 19-related protein (.1) Potri.013G060900 [exp] 73 / 3e-13 AT5G18260 123 / 9e-32 RING/U-box superfamily protein (.1) Potri.019G032300 [exp] 71 / 1e-12 AT5G18260 122 / 2e-31 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF08241 [flax] [poplar] Methyltransf_11 Methyltransferase domain CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain CL0392 [flax] [poplar] PF04667 [flax] [poplar] Endosulfine cAMP-regulated phosphoprotein/endosulfine conserved region
Representative CDS sequence Show only first row Show all	>Lus10037162 pacid=23152375 polypeptide=Lus10037162 locus=Lus10037162.g ID=Lus10037162.BGIv1.0 annot-version=v1.0 ATGTCGAGCGGTGGAGATCCAAACCCATCTCCCTCTCAGGCGCAGGAGGAGCAAATACTCAAGAGCAAGTATGGAGGGATCTTACCCAAGAAGAAGCCAC TGATATCCAAGGATCATGAGCGTGCCTTCTTCGACTCTGCAGATTGGGCACTGGGAAAGGGGGCGCAAAAGCCTAAAGGGCCACTTGAAGCACTCCGCCC CAAGTTACAGGCAGTGATGAACAGAGTTCATCCACCCAGACCCGAATGGTACGAGGAGTTGTACGCTAGGGTTCTTAATTCCGGAATGGAAGCTTACGAG CAGGAGGTTGCAGTTTACAAGTCGTTGCTGTTCAGTAAGTTAAAGGGAAAGGCTAAGAAAGTACTGGAGATCGGCATTGGGACCGGACCGAATCTCAGGT ACTACGCTGGTAGTAAGAAAGGTGATATTCATGTCATTGGCATTGATCCCAACAGCAAGATGCAGAGGTATGCATCTCAAGCTGCTATTGCTGCTGGATT ACCTCCTTCGAGCTTCGAGTTCGCCCAAGCTGTTGGTGAGGCCATACCGCTCGATGATGCTTCAGTTGATGCCGTCATTGGGACACTTGTTTTGTGTTCT GTCGAAGATGTCGATCTCACGCTGCAAGAGGTTAAGAGAGTGATGAAGCCGGGAGGGGTGTACGTATTCGTGGAGCATGTTGCTGCAAGAGATGGAACAA CGCAGAGGTTGCTGCAGAATGTGGTTGATCCATTGCAGCAGACGCTTGCTGATGGATGTCATCTAACAAGGGAAACAGGAACCCGGATTTCGAAAGCCGG GTTCTCGTTCGTGTACCTGGACTCGGCTTATCTGTCCAGTGCCTTGTTCATCAACCCTCATGTGTATGGAATGGCTACCAAAGCTCCTCCTAGAACTAAT CTTGGTGCAGTGAGGTTAATCCATGGTGTCAGCAAGAATGCTACTGAATCAGACATTAAGAAAGCATATTATCAAGTCTATAGGAGATCAAGTACAGCTT CAATAAGGGTCTGCAATTCTTTTCCTGGGAATGTTGATCGGTGGTCATTCGGAGCTCCTCCTAAAACTAAAGTTGGTGCAGTGAGGTTAATCCATGGCAC AGCTTACACCGCAAGAGATTATTTCGAGATACTTGGTGTCAGCAGGAATGCGACTCAATCAGACATTAAGAAGGCATATTATCAACTAGCAAAAAAACTG CATCCAGATACTAACAAACATGACCCTCAAGCTCACAAAAAATTCCAACAACTTTCTAAGGTTTACGAGGTTCATAAAAATGATCGTTTAGACCCTCACC GTTTGATTATAAAGCGGGTTGGTTTAATGGGGGTTCTGGAGAAAAATCGCTCTACCCGAACCATGGAGGTAATGTGCCTTCGACATATCTTTCCACTCGA GTTCCAACGTTTCTCTCTTGGATTTTCAGCTTACCACGTTTTTAAAACTGTGCATGGGACTTCAGGAAACCACGGAAGGGTCTCATCGTTCTCGAATTCA GACATTAGCGAGTTCGAGGCTTCCTTCAAGTCTTCCCATTGCAGCAACTTCTCTAGTCACAGGTCGTTTTTGTCGAAACCTATCCATCCTTTATCAACTC TGTACCATGACTATGAAGCTTCGACCAGTCAAAGAGATGCATATAGCTGGAGAAGTACTGCTAGCAGCAGTAGCAGCACTGATTTCGCAGATGTTTCCGA AACATTCGAGCCCGAGAATCTAGCATGTCCATATGCTGATGGATTCATATGTGGGCTTTGTGAAAGGTTTCTTTCACACAGATCTCCGTACAGCTCTCGT GGGATCACGATAACCAGAACCATGCCTCCTTCTGCGGTTCTTTCGTGTCGCCATGTCTTCCATTCTGAATGCTTAGATCAGATAACTCCCGTTTCGCATT TAAGTGATCCACCATGCGCCATTTGTTCAAGATTTGAAGAAGGATTTGCCAGGTTGAAAAACAGTTTCCCAAAGTTCAGTAGACCAATGCTCGAGGATAC ACAGTCGAGACCTCGGGCCGTGTGTGTACAGAAGGCACCGCAATGCAGTACCATGTTGGTTCTGAATCAAAACCGTGTGAGAAAGACTTCGGTTGAAAGG AAACTCAATCAAAGGATTACCTGGTAA
AA sequence Show only first row Show all	>Lus10037162 pacid=23152375 polypeptide=Lus10037162 locus=Lus10037162.g ID=Lus10037162.BGIv1.0 annot-version=v1.0 MSSGGDPNPSPSQAQEEQILKSKYGGILPKKKPLISKDHERAFFDSADWALGKGAQKPKGPLEALRPKLQAVMNRVHPPRPEWYEELYARVLNSGMEAYE QEVAVYKSLLFSKLKGKAKKVLEIGIGTGPNLRYYAGSKKGDIHVIGIDPNSKMQRYASQAAIAAGLPPSSFEFAQAVGEAIPLDDASVDAVIGTLVLCS VEDVDLTLQEVKRVMKPGGVYVFVEHVAARDGTTQRLLQNVVDPLQQTLADGCHLTRETGTRISKAGFSFVYLDSAYLSSALFINPHVYGMATKAPPRTN LGAVRLIHGVSKNATESDIKKAYYQVYRRSSTASIRVCNSFPGNVDRWSFGAPPKTKVGAVRLIHGTAYTARDYFEILGVSRNATQSDIKKAYYQLAKKL HPDTNKHDPQAHKKFQQLSKVYEVHKNDRLDPHRLIIKRVGLMGVLEKNRSTRTMEVMCLRHIFPLEFQRFSLGFSAYHVFKTVHGTSGNHGRVSSFSNS DISEFEASFKSSHCSNFSSHRSFLSKPIHPLSTLYHDYEASTSQRDAYSWRSTASSSSSTDFADVSETFEPENLACPYADGFICGLCERFLSHRSPYSSR GITITRTMPPSAVLSCRHVFHSECLDQITPVSHLSDPPCAICSRFEEGFARLKNSFPKFSRPMLEDTQSRPRAVCVQKAPQCSTMLVLNQNRVRKTSVER KLNQRITW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69523			S-adenosyl-L-methionine-depend...		Lus10037162 [exp]	0	1
AT2G15790		CYP40, SQN	SQUINT, CYCLOPHILIN 40, peptid...		Lus10012059 [exp]	2.6	0.9160
AT3G60600		(AT)VAP, (AT)VA...	VAMP/SYNAPTOBREVIN-ASSOCIATED ...		Lus10007463 [exp]	6.9	0.8869
AT1G44170		ALDH4, ALDH3H1	aldehyde dehydrogenase 4, alde...		Lus10025681 [exp]	19.5	0.8888
AT1G48960			Adenine nucleotide alpha hydro...		Lus10027236 [exp]	22.1	0.8951
AT3G57040		ATRR4, ARR9	RESPONSE REGULATOR 4, response...		Lus10002750 [exp]	27.7	0.8705
AT1G24440			RING/U-box superfamily protein...		Lus10036937 [exp]	28.1	0.8936
AT1G22450		ATCOX6B2, COX6B	CYTOCHROME C OXIDASE 6B2, cyto...		Lus10036478 [exp]	28.3	0.8314
AT1G78620			Protein of unknown function DU...		Lus10042501 [exp]	28.8	0.8229
AT5G19730			Pectin lyase-like superfamily ...		Lus10028364 [exp]	30.6	0.8886
AT4G21215			unknown protein		Lus10007639 [exp]	33.7	0.8197

Compare expression of checked genes

Lus10037162 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.