Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14170 374 / 3e-123 RNA-binding KH domain-containing protein (.1.2.3) AT5G15270 375 / 9e-123 RNA-binding KH domain-containing protein (.1.2) AT5G46190 117 / 2e-27 RNA-binding KH domain-containing protein (.1) AT1G51580 107 / 3e-24 RNA-binding KH domain-containing protein (.1) AT4G18375 100 / 4e-22 RNA-binding KH domain-containing protein (.1.2) AT5G53060 100 / 1e-21 RNA-binding KH domain-containing protein (.1.2) AT2G03110 87 / 6e-20 RNA binding;nucleic acid binding (.1) AT5G64390 89 / 6e-18 HEN4 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) AT4G26000 67 / 2e-11 PEP PEPPER, RNA-binding KH domain-containing protein (.1) AT3G04610 62 / 7e-10 FLK flowering locus KH domain, RNA-binding KH domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036767 [exp] 772 / 0 AT5G15270 483 / 2e-165 RNA-binding KH domain-containing protein (.1.2) Lus10030689 [exp] 408 / 2e-135 AT5G15270 638 / 0.0 RNA-binding KH domain-containing protein (.1.2) Lus10005232 [exp] 407 / 5e-134 AT5G15270 634 / 0.0 RNA-binding KH domain-containing protein (.1.2) Lus10038509 [exp] 144 / 8e-36 AT5G46190 653 / 0.0 RNA-binding KH domain-containing protein (.1) Lus10023300 [exp] 143 / 1e-35 AT5G46190 643 / 0.0 RNA-binding KH domain-containing protein (.1) Lus10033557 [exp] 114 / 5e-27 AT5G15270 201 / 3e-59 RNA-binding KH domain-containing protein (.1.2) Lus10028237 [exp] 114 / 4e-26 AT5G64390 243 / 8e-71 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Lus10007236 [exp] 112 / 2e-25 AT5G64390 249 / 6e-73 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Lus10005915 [exp] 101 / 4e-22 AT5G53060 599 / 0.0 RNA-binding KH domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G088600 [exp] 554 / 0 AT5G15270 454 / 5e-155 RNA-binding KH domain-containing protein (.1.2) Potri.010G167100 [exp] 541 / 0 AT5G15270 455 / 3e-155 RNA-binding KH domain-containing protein (.1.2) Potri.017G085500 [exp] 425 / 4e-142 AT5G15270 592 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.004G123400 [exp] 403 / 3e-133 AT5G15270 596 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.017G114400 [exp] 188 / 1e-50 AT5G15270 259 / 8e-78 RNA-binding KH domain-containing protein (.1.2) Potri.004G066100 [exp] 144 / 2e-36 AT4G18375 558 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.011G082500 [exp] 134 / 8e-33 AT5G46190 525 / 5e-180 RNA-binding KH domain-containing protein (.1) Potri.015G011100 [exp] 122 / 6e-29 AT5G53060 699 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.002G112200 [exp] 116 / 5e-27 AT5G53060 243 / 7e-71 RNA-binding KH domain-containing protein (.1.2) Potri.010G251700 [exp] 110 / 5e-25 AT1G51580 434 / 9e-145 RNA-binding KH domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0007 [flax] [poplar] KH PF00013 [flax] [poplar] KH_1 KH domain
Representative CDS sequence Show only first row Show all	>Lus10037163 pacid=23152410 polypeptide=Lus10037163 locus=Lus10037163.g ID=Lus10037163.BGIv1.0 annot-version=v1.0 ATGGCCGGCCAACGCAACGACTACGGCAAGAGATCGTCGAATTTCCACTCAGACTACGGCGGAGGGAAGCGCCACAACCTCTCCGGCGACGACTCCGGCG ACCTCCCGCACGGGATTGGCAACGACGACACCGTTTACCGCTACCTCTGCCCCGTGAGAAAAATCGGGAGCATAATCGGAAGGGGTGGAGAGATCGCGAA GCAGCTAAGGGCCGAGAGCAAGTCTAGCATCCGCATCAGCGAGTCAATCCCAGGGTTTGACGAGCGGATTGTGACTGTTTACAGCACCAGCGAGGAGACG AATTCGTTTGGCGGCGGCGGGGAGGAAGGGGAGGAGGAGGACGGTGGTGGTGGTGGTGGCGATTTGGTGTGTCCGGCTCAGCACGCGTTGTTTCTGGTTC ACGATCGGGTTGTGGCGGAGGAGCGTGGAAGGGAAGAGGAAGATGTGGTGGAGGATGATGATGAGGATGAGACTGGGGAAGTTCAGAGGAAGCAGGTGAG TGTGAGGATGTTGGTTCCTTCTGATCAGATTGGGTGCGTAATTGGGAAAGGTGGACAGGTGATTCAGGGGATTCGTAGTGAGACTGGTGCTCAGATTCGG ATTCTAAAGGATGAGCATCTTCCTCCCTTTGCATTGACCACTGACGAGCTTCTCCAGATTGTAGGAGAGCCTGCAGTTGTGAGGATGGCGCTTATGCAAG TGGCAACACGTCTTCACGAGAACCCGTCTCGGTTTCAGCACTTGCTGCTGTCTACTTCAAGCAATCCGTATCAGTCTAGTGGTGGGATGTTTGTGCCGCC GAGTGCTGGTGTTCCGGCTTATGGAGGTTACAAAGGTGGGTGGCCGGATTCGAGAGATGATGCTGGTTCAGCTAGGGATTTCGCGATTCGTTTGGTCTGT CCGATTGGGAATATTGGGAGTGTGATTGGGAAAGGTGGTAGCATTATTAAACAGATTCGACAGGAGACTAGGGCTGGTATTAAAGTTGATAGCTCTGGTG CTGATGGAGATGATTGTATTATATTTATTTCGGCAAAAGAGGTTTTGGAGGATCAATCGCCGACCATTAATGCAGCACTGAAGATGCAACCTCGGTGCAG TGAGAAATCTGAAAGAGACTCTGGAGATTCTGTACTGACCACTCGTATCCTTGTACCAAGGTCACAGGTAGGATGCCTTATGGGTAAAGGCGGGTCCATT ATTTCGGAAATGAGGAGTGTAACTAGGGCAAGCATACGGATTCTTTCGGAGGATAATCTTCCTAAAGTTGCATCCGAAGATGACGAAATGGTGCAGATCA CTGGAAACCATGATGTTGCCAGCAATGCCCTTTTGCAAGTACTCCTAAGGTTGAAAGCCAATGTTTTTGGAAGAGATGGTGCTCTATCTTCATTTCAACC AGCTCTTCCATATGTCCCAATGCCTTTAGAAATGTCAGATGGTTTGATAGGAAGCCGAGATGGTCAATCTCGTGGGCGTGGTGGATACCCTTCAGCCTCA GGATCATACGGTTCTCTACATTCAAGTGACAGCTATGCGAGTCCATTGGCTGGTAGCGAAAGTGGTTATGGCGCATATGGCAACTTGTCTTCTGGTAGAT CAAGTGGTGCTGGGCTTTTTTCGTGGACTCGCTTTCTCGAAGCAGAAGCAGCAGCTACGGCGGAGGAAGAGCCGATTCAGCCTTGTCCAGAGTCTGTGCG GGCATCTATTTTGAGGTTCCTTCCCCTCTCTGATATGATTATTGACCCCTGCGATGAACTTAATGCTCGGGGTAGATTCGAGGTTTATAACTGCGCGGAG GAAGACAACTTGTTTTTGTGTGGATTCCGTGAATATTCTAAGTCAGACGAGCTGAGCAGAGCGTTCTTCGTTTGTAATCGGCGTACAAAGCAGTGGATTG TACTTGTCCCTGCCAATAGACACTCCGTTAGGCAGGCTCTCAGAGATCTTGGTTTTGTCGACGAGCTTGTGTTATCCGAGGCTTTTGGTTTCTGA
AA sequence Show only first row Show all	>Lus10037163 pacid=23152410 polypeptide=Lus10037163 locus=Lus10037163.g ID=Lus10037163.BGIv1.0 annot-version=v1.0 MAGQRNDYGKRSSNFHSDYGGGKRHNLSGDDSGDLPHGIGNDDTVYRYLCPVRKIGSIIGRGGEIAKQLRAESKSSIRISESIPGFDERIVTVYSTSEET NSFGGGGEEGEEEDGGGGGGDLVCPAQHALFLVHDRVVAEERGREEEDVVEDDDEDETGEVQRKQVSVRMLVPSDQIGCVIGKGGQVIQGIRSETGAQIR ILKDEHLPPFALTTDELLQIVGEPAVVRMALMQVATRLHENPSRFQHLLLSTSSNPYQSSGGMFVPPSAGVPAYGGYKGGWPDSRDDAGSARDFAIRLVC PIGNIGSVIGKGGSIIKQIRQETRAGIKVDSSGADGDDCIIFISAKEVLEDQSPTINAALKMQPRCSEKSERDSGDSVLTTRILVPRSQVGCLMGKGGSI ISEMRSVTRASIRILSEDNLPKVASEDDEMVQITGNHDVASNALLQVLLRLKANVFGRDGALSSFQPALPYVPMPLEMSDGLIGSRDGQSRGRGGYPSAS GSYGSLHSSDSYASPLAGSESGYGAYGNLSSGRSSGAGLFSWTRFLEAEAAATAEEEPIQPCPESVRASILRFLPLSDMIIDPCDELNARGRFEVYNCAE EDNLFLCGFREYSKSDELSRAFFVCNRRTKQWIVLVPANRHSVRQALRDLGFVDELVLSEAFGF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15270			RNA-binding KH domain-containi...		Lus10037163 [exp]	0	1
AT5G17380			Thiamine pyrophosphate depende...		Lus10009141 [exp]	6.1	0.8278
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10014942 [exp]	18.8	0.8237
					Lus10028488 [exp]	21.9	0.8240
AT2G44350		CSY4, ATCS	CITRATE SYNTHASE 4, Citrate sy...		Lus10019688 [exp]	64.1	0.7279
AT2G02040		NTR1, ATPTR2-B	NITRATE TRANSPORTER 1, ARABIDO...		Lus10011055 [exp]	113.2	0.7788
AT5G66460		MAN7, AtMAN7	endo-beta-mannase 7, Glycosyl ...		Lus10007900 [exp]	123.1	0.7689
AT1G03610			Protein of unknown function (D...		Lus10039803 [exp]	133.6	0.7397
AT5G40760		G6PD6	glucose-6-phosphate dehydrogen...		Lus10032079 [exp]	147.1	0.7502
AT1G01800			NAD(P)-binding Rossmann-fold s...		Lus10006895 [exp]	154.7	0.7658
AT5G11520		YLS4, ASP3	YELLOW-LEAF-SPECIFIC GENE 4, a...		Lus10022137 [exp]	202.8	0.7398

Compare expression of checked genes

Lus10037163 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.