Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01020 426 / 4e-145 Protein kinase superfamily protein (.1) AT5G56460 300 / 8e-96 Protein kinase superfamily protein (.1) AT2G05940 286 / 8e-90 RIPK RPM1-induced protein kinase, Protein kinase superfamily protein (.1) AT2G26290 283 / 2e-89 ARSK1 root-specific kinase 1 (.1) AT5G35580 279 / 8e-87 Protein kinase superfamily protein (.1) AT2G07180 276 / 2e-86 Protein kinase superfamily protein (.1.2) AT3G28690 273 / 7e-86 Protein kinase superfamily protein (.1.2.3) AT5G15080 273 / 2e-84 Protein kinase superfamily protein (.1) AT2G28930 265 / 2e-82 APK1B protein kinase 1B (.1.2.3) AT3G01300 266 / 7e-82 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036762 [exp] 490 / 5e-169 AT5G01020 672 / 0.0 Protein kinase superfamily protein (.1) Lus10013406 [exp] 286 / 1e-90 AT5G56460 630 / 0.0 Protein kinase superfamily protein (.1) Lus10010319 [exp] 286 / 3e-90 AT5G56460 613 / 0.0 Protein kinase superfamily protein (.1) Lus10006643 [exp] 286 / 3e-90 AT5G15080 495 / 2e-173 Protein kinase superfamily protein (.1) Lus10030668 [exp] 287 / 1e-89 AT5G15080 723 / 0.0 Protein kinase superfamily protein (.1) Lus10005255 [exp] 286 / 1e-89 AT5G15080 720 / 0.0 Protein kinase superfamily protein (.1) Lus10038087 [exp] 285 / 1e-89 AT5G15080 499 / 6e-175 Protein kinase superfamily protein (.1) Lus10034897 [exp] 284 / 2e-88 AT2G05940 636 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10033429 [exp] 280 / 5e-87 AT2G05940 636 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G113600 [exp] 440 / 4e-150 AT5G01020 664 / 0.0 Protein kinase superfamily protein (.1) Potri.016G143200 [exp] 438 / 3e-149 AT5G01020 655 / 0.0 Protein kinase superfamily protein (.1) Potri.001G002300 [exp] 301 / 8e-97 AT5G56460 608 / 0.0 Protein kinase superfamily protein (.1) Potri.006G219300 [exp] 290 / 1e-91 AT2G05940 536 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Potri.010G033800 [exp] 290 / 5e-91 AT5G15080 669 / 0.0 Protein kinase superfamily protein (.1) Potri.008G194700 [exp] 289 / 7e-91 AT5G15080 671 / 0.0 Protein kinase superfamily protein (.1) Potri.004G129000 [exp] 288 / 1e-90 AT5G15080 659 / 0.0 Protein kinase superfamily protein (.1) Potri.006G141500 [exp] 288 / 1e-90 AT2G05940 638 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Potri.006G066100 [exp] 286 / 2e-90 AT5G15080 503 / 6e-177 Protein kinase superfamily protein (.1) Potri.018G127300 [exp] 281 / 3e-88 AT3G01300 498 / 5e-175 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10037165 pacid=23152512 polypeptide=Lus10037165 locus=Lus10037165.g ID=Lus10037165.BGIv1.0 annot-version=v1.0 ATGGGCAACTGCGGTACCAGAGAGGAGTCTGCTGTCGTCGTCGTCGTCCCAACTTCTCAAGCAGCTCAACATCAGCAGTCATCTTCGTCGTCGTCAGCTG CTACCGCAGCGAAGAGCTTGGAAAGAAAACCACCTTATCACAACCGCTCCATCTCAGATCTAAGCGATCCTTCTTCCACGCCGCGCAGCGTCGACCACTT CGCCGACGGCGGCAAGAACGCACTCCTCCTCTACACCCATGTCATCTCCTTCACTCTCTTCGAGCTCGAGACCATCACCAAGAGCTTCCGTTCGGACTAT ATCCTCGGCGAAGGTGGATTTGGCACTGTCTACAAAGGCTACATTGACGAGAATGTCCGCGTCGGACTTAGATCTCTCCCCGTCGCCGTCAAGGTTCTCA ACAAGGAAGGTCTTCAAGGCCACCGTGAGTGGCTTACGGAGGTCAACTTTCTCGGCAAACTTCGGCACCCGAATCTGGTTAAATTGATTGGATACTGTTG CGAGGATGATCACCGGTTGCTTGTTTACGAGTTCATGTTCCGTGGGAGCCTTGAGAATCACCTGTTTAGAAAGACAGCAGTTCCGTTATCTTGGGCGACA AGAATGATGATTGCTCTAGGAGCCGCCAAAGGCCTTGCTTTCTTGCATAATGCGGAGAGGCCAGTTATATACAGAGACTTCAAAACCTCTAATATATTGT TGGACTCGGTGGGTTGGCCTATTTCTGATGTTTCTCTTCTTGAAACAACCGTTGTTGTTTATTTTAAATCAGTTGGTCATGTTCATGTACAGGATCATAC GGCCAAACTTTCTGATTTCGGCCTTGCAAAAGCTGGACCACAAGAGACAGCAGTTCCGTTATCTTGGGCGACAAGAATGATGATTGCTCTAGGAGCCGCC AAAGGCCTTGCTTTCTTGCATAATGCGGAGAGGCCAGTTATATACAGAGACTTCAAAACCTCTAATATATTGTTGGACTCGGATCATACGGCCAAACTGT CTGATTTTGGCCTTGCCAAAGCTGGACCACAAGGTGATGAAACTCATGTATCCACTCGAGTCATGGGGACCTATGGCTACGCTGCCCCGGAATATGTTAT GACCGGTCACTTGACTGCAAGAAGTGACGTATACAGCTTTGGCGTTGTTCTTCTCGAGCTATTAACAGGGAGGAAGTCAGTCGACAAGACTAGGCCGAGC AGGGAGCAGAGCTTGGTGGATTGGGCTCGGCCGAAGTTGAACGATAAGAGAAAGCTTCTTCAAATCATCGACCCAAGATTGGAGAACCAATACTCGGTAA GGGCAGCACAGAAAGCTTGCAGCTTGGCGTACTATTGCCTGAGCCAGAATCCCAAGGCGAGACCTTTGATGAGCGATGTCGTTGAAACTCTCGAACCCCT TCAGTGCAGTAGCGATGGAGCCAGCAAAGTAGTCATGCCCTCTTTAAGGACAGGCATGGGGGGAATGGTCGACTATCGAACACGCCGAAGATATGCCGCA AACGTCGGTCCGGGTTCTAGTTGTCGGTCTCCTAGTCCGAATGTTGTCGCCTCCCCGGGAGGCCCAGCAGCTTGCCGGAAAACCAATAAGCTAGTCTCTC CGGAGCTACCAAAAATGACATTTCCGACGACTACTTTGCCTCGATCGTCGGGCAAACCGTGCCTCGATCGTCGGGCAAACTGTGCCTCGATCATTGGGCA AACTGTAGCATATGGAGGATTATCGTGCTGTCGAGGCCACCAAATAACGATAATCTGCTGGGTCTATCACCCACGCCAAACTCTGTCGATCAATCCACCT TTCCCGGCTTCAAATCTGTCAAGAAAAGGACCTGAAACTGATCGTTGA
AA sequence Show only first row Show all	>Lus10037165 pacid=23152512 polypeptide=Lus10037165 locus=Lus10037165.g ID=Lus10037165.BGIv1.0 annot-version=v1.0 MGNCGTREESAVVVVVPTSQAAQHQQSSSSSSAATAAKSLERKPPYHNRSISDLSDPSSTPRSVDHFADGGKNALLLYTHVISFTLFELETITKSFRSDY ILGEGGFGTVYKGYIDENVRVGLRSLPVAVKVLNKEGLQGHREWLTEVNFLGKLRHPNLVKLIGYCCEDDHRLLVYEFMFRGSLENHLFRKTAVPLSWAT RMMIALGAAKGLAFLHNAERPVIYRDFKTSNILLDSVGWPISDVSLLETTVVVYFKSVGHVHVQDHTAKLSDFGLAKAGPQETAVPLSWATRMMIALGAA KGLAFLHNAERPVIYRDFKTSNILLDSDHTAKLSDFGLAKAGPQGDETHVSTRVMGTYGYAAPEYVMTGHLTARSDVYSFGVVLLELLTGRKSVDKTRPS REQSLVDWARPKLNDKRKLLQIIDPRLENQYSVRAAQKACSLAYYCLSQNPKARPLMSDVVETLEPLQCSSDGASKVVMPSLRTGMGGMVDYRTRRRYAA NVGPGSSCRSPSPNVVASPGGPAACRKTNKLVSPELPKMTFPTTTLPRSSGKPCLDRRANCASIIGQTVAYGGLSCCRGHQITIICWVYHPRQTLSINPP FPASNLSRKGPETDR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01020			Protein kinase superfamily pro...		Lus10037165 [exp]	0	1
AT5G44670			Domain of unknown function (DU...		Lus10024731 [exp]	1.4	0.8346
AT5G07700	MYB	ATMYB76	myb domain protein 76 (.1)		Lus10019085 [exp]	4.9	0.8024
AT4G28570			Long-chain fatty alcohol dehyd...		Lus10024922 [exp]	5.7	0.8266
AT3G46450			SEC14 cytosolic factor family ...		Lus10040845 [exp]	6.6	0.7699
AT5G42660			Protein of unknown function (D...		Lus10016294 [exp]	6.9	0.7889
AT5G44670			Domain of unknown function (DU...		Lus10008076 [exp]	11.3	0.7998
AT3G51850		CPK13	calcium-dependent protein kina...		Lus10002482 [exp]	11.8	0.7939
AT1G62400		HT1	high leaf temperature 1, Prote...		Lus10015541 [exp]	18.5	0.7654
AT2G25290		Phox1	Phox1, Octicosapeptide/Phox/Be...		Lus10006196 [exp]	19.4	0.7623
AT2G40280			S-adenosyl-L-methionine-depend...		Lus10040950 [exp]	20.9	0.7617

Compare expression of checked genes

Lus10037165 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.