Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03060 249 / 2e-79 MADS AGL30 AGAMOUS-like 30 (.1.2) AT1G18750 233 / 4e-73 MADS AGL65, AGL102 AGAMOUS-like 65 (.1.2) AT1G69540 223 / 5e-70 MADS AGL94 AGAMOUS-like 94 (.1) AT1G77980 102 / 3e-24 MADS AGL66 AGAMOUS-like 66 (.1) AT1G22130 98 / 1e-22 MADS AGL104 AGAMOUS-like 104 (.1) AT1G77950 88 / 1e-19 MADS AGL67 AGAMOUS-like 67 (.1.2) AT2G26320 72 / 2e-15 MADS AGL33 AGAMOUS-like 33 (.1) AT3G57390 73 / 1e-14 MADS AGL18 AGAMOUS-like 18 (.1.2) AT2G34440 71 / 3e-14 MADS AGL29 AGAMOUS-like 29 (.1) AT5G13790 69 / 4e-13 MADS AGL15 AGAMOUS-like 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036761 [exp] 691 / 0 AT2G03060 284 / 5e-93 AGAMOUS-like 30 (.1.2) Lus10026613 [exp] 494 / 3e-175 AT2G03060 308 / 2e-102 AGAMOUS-like 30 (.1.2) Lus10030450 [exp] 486 / 6e-173 AT2G03060 301 / 4e-100 AGAMOUS-like 30 (.1.2) Lus10019089 [exp] 270 / 2e-87 AT1G18750 279 / 3e-91 AGAMOUS-like 65 (.1.2) Lus10034464 [exp] 273 / 9e-86 AT1G18750 281 / 1e-88 AGAMOUS-like 65 (.1.2) Lus10022506 [exp] 102 / 3e-24 AT1G22130 277 / 1e-91 AGAMOUS-like 104 (.1) Lus10016810 [exp] 95 / 1e-21 AT1G22130 239 / 5e-77 AGAMOUS-like 104 (.1) Lus10024823 [exp] 90 / 4e-20 AT1G22130 142 / 3e-40 AGAMOUS-like 104 (.1) Lus10018714 [exp] 77 / 9e-16 AT1G22130 122 / 7e-33 AGAMOUS-like 104 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G088200 [exp] 449 / 1e-157 AT2G03060 297 / 4e-98 AGAMOUS-like 30 (.1.2) Potri.010G167300 [exp] 446 / 2e-156 AT2G03060 259 / 4e-83 AGAMOUS-like 30 (.1.2) Potri.007G087500 [exp] 98 / 1e-22 AT1G22130 229 / 9e-73 AGAMOUS-like 104 (.1) Potri.002G092300 [exp] 95 / 2e-21 AT1G22130 313 / 1e-105 AGAMOUS-like 104 (.1) Potri.007G120002 [exp] 70 / 7e-15 AT1G77980 97 / 1e-25 AGAMOUS-like 66 (.1) Potri.009G055700 [exp] 73 / 2e-14 AT5G13790 241 / 9e-80 AGAMOUS-like 15 (.1) Potri.015G098400 [exp] 71 / 5e-14 AT4G22950 136 / 4e-40 AGAMOUS-like 19 (.1) Potri.006G048700 [exp] 70 / 2e-13 AT3G57390 219 / 2e-71 AGAMOUS-like 18 (.1.2) Potri.005G155300 [exp] 69 / 3e-13 AT2G22540 234 / 8e-78 SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) Potri.005G182200 [exp] 68 / 4e-13 AT5G20240 244 / 2e-82 PISTILLATA, K-box region and MADS-box transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10037166 pacid=23152572 polypeptide=Lus10037166 locus=Lus10037166.g ID=Lus10037166.BGIv1.0 annot-version=v1.0 ATGGGAAGGGTTAAGCTGAAGATCAAGAAACTGGAGAACACCAATGGGCGTCAAGCAACGTATGGAAAGAGGAAGCATGGTATCATGAAGAAGGCTAGCG AGTTGGCGATACTATGCGATATTCCGCTTATCCTTCTAATGTTCTCACCAACTGGCAAGCCTGCATTGTGCAAAGGAAAGCGCAGTATTGAAGAAGTAAT GTCGAAATTTGCTCAATTAGCACCACAAGAAAGGACGAAAAGGAAGATGGAAAGTCTCGAAGCGTTGAAGAAAACGTTTAAGAAGTTGGATCATGATGTC AACATCCAGGAGTTTTTGGGGTCGAGACTTGTCTCACTTTGTGAAACTTCAATTGATCAGGACCTTGTAAATCAGTCGAATCTGTTGAAGAATCAACTTT CCGAAACGCATAAGAGACTGGAGTACTGGGAAAACCTCGACAAAGTCGACAGCATTGAACTGTTGGGGCAGATGGAGAATTCCGTCCAGGAGTCGCTTAG TCGAATCCAAGAACTTAAGGACAATTTAGGAAAACAGCAAATTGGATTACTAGAGTGCCATAGTCAGTTTCAAGACGAGATGCAGGTACCTTTCGGGATG AATGCCGAGCAGCAACAGGTCCCGCCTTTTCAATGGCTTTCGAACTGTGACCCCCAACACATCGTGTTCCCGGATGACCATAATCTCCTCTCTCACAGGG ATGTTGAATGCTCTGCAAGTTCTTCCTACGGAGGCTATTCTGGATACTTCTACCCCGGAAAAGGCTCCGATCTCTCGAATTCCAGACAAGAAAGTGGCGT GAGCGGTATTCTGAATGAGTTAAATGGGAATGCATCTTTGAGGATGCAATTGACCGGGCAGTACCCGTTCTTTCCATACAATCTAAATTTGCTCGATGAC CGAAAGTTCCAGCCAGCAGTAGCAGAGATGAGCCTACTGCAGGAAGGTGCTGTGGATTGCAACGTTAATGGAAGCTTCGAAGCTCCCAAACCTGCCTATT GTAACACTCCTGGTAGCTGGGCTTCTACGTCCGGACCTTGCGCTGTCCCCACCATGTTCGACGACCAACTGTATTCCCAGGTTCAACCTCTTGTCGAATT CGAGCAATGCTGCGACCCGGTTTATTCATTTAAAACTCACACTTAG
AA sequence Show only first row Show all	>Lus10037166 pacid=23152572 polypeptide=Lus10037166 locus=Lus10037166.g ID=Lus10037166.BGIv1.0 annot-version=v1.0 MGRVKLKIKKLENTNGRQATYGKRKHGIMKKASELAILCDIPLILLMFSPTGKPALCKGKRSIEEVMSKFAQLAPQERTKRKMESLEALKKTFKKLDHDV NIQEFLGSRLVSLCETSIDQDLVNQSNLLKNQLSETHKRLEYWENLDKVDSIELLGQMENSVQESLSRIQELKDNLGKQQIGLLECHSQFQDEMQVPFGM NAEQQQVPPFQWLSNCDPQHIVFPDDHNLLSHRDVECSASSSYGGYSGYFYPGKGSDLSNSRQESGVSGILNELNGNASLRMQLTGQYPFFPYNLNLLDD RKFQPAVAEMSLLQEGAVDCNVNGSFEAPKPAYCNTPGSWASTSGPCAVPTMFDDQLYSQVQPLVEFEQCCDPVYSFKTHT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03060	MADS	AGL30	AGAMOUS-like 30 (.1.2)		Lus10037166 [exp]	0	1
AT1G60460			unknown protein		Lus10041115 [exp]	58.9	0.6506
AT3G58670			Protein of unknown function (D...		Lus10020711 [exp]	59.5	0.6350
AT1G16590		REV7, ATREV7	DNA-binding HORMA family prote...		Lus10006836 [exp]	66.9	0.6102
AT4G17740			Peptidase S41 family protein (...		Lus10023704 [exp]	72.5	0.6051
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Lus10031976 [exp]	107.2	0.6154
					Lus10019251 [exp]	123.9	0.5919
AT4G26450		WIP1	unknown protein		Lus10027095 [exp]	188.7	0.5826
AT5G07240		IQD24	IQ-domain 24 (.1)		Lus10005760 [exp]	234.3	0.5538
AT5G46240		KAT1	potassium channel in Arabidops...		Lus10028128 [exp]	238.1	0.5646
AT2G04740			ankyrin repeat family protein ...		Lus10012362 [exp]	268.4	0.5502

Compare expression of checked genes

Lus10037166 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.