Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39660 169 / 9e-48 DOF CDF2, AtDof5. 2 cycling DOF factor 2 (.1.2) AT3G47500 154 / 3e-42 DOF CDF3, AtDof3,3 cycling DOF factor 3 (.1) AT5G62430 128 / 5e-34 DOF CDF1, AtDof5,5 cycling DOF factor 1 (.1) AT1G29160 119 / 6e-32 DOF AtDof1. 5 Dof-type zinc finger DNA-binding family protein (.1) AT2G34140 114 / 4e-30 DOF AtDof2. 3 Dof-type zinc finger DNA-binding family protein (.1) AT1G26790 119 / 7e-30 DOF AtDof1,3 Dof-type zinc finger DNA-binding family protein (.1) AT1G69570 116 / 8e-29 DOF AtDof1,10 Dof-type zinc finger DNA-binding family protein (.1) AT5G60850 105 / 1e-25 DOF OBP4, AtDof5. 4 OBF binding protein 4 (.1) AT1G51700 101 / 6e-25 DOF ADOF1, AtDof1. 7 DOF zinc finger protein 1 (.1) AT5G60200 101 / 2e-24 DOF TMO6, AtDof5,3 TARGET OF MONOPTEROS 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036760 [exp] 384 / 6e-133 AT5G39660 200 / 1e-60 cycling DOF factor 2 (.1.2) Lus10034461 [exp] 170 / 6e-48 AT3G47500 331 / 2e-109 cycling DOF factor 3 (.1) Lus10019093 [exp] 165 / 4e-46 AT3G47500 330 / 8e-109 cycling DOF factor 3 (.1) Lus10020314 [exp] 141 / 4e-38 AT5G62430 196 / 8e-59 cycling DOF factor 1 (.1) Lus10020315 [exp] 141 / 1e-37 AT5G62430 201 / 7e-60 cycling DOF factor 1 (.1) Lus10005677 [exp] 139 / 4e-37 AT5G62430 199 / 3e-59 cycling DOF factor 1 (.1) Lus10013905 [exp] 119 / 9e-32 AT2G34140 171 / 9e-55 Dof-type zinc finger DNA-binding family protein (.1) Lus10001896 [exp] 118 / 1e-31 AT2G34140 172 / 3e-55 Dof-type zinc finger DNA-binding family protein (.1) Lus10012619 [exp] 100 / 2e-23 AT3G61850 201 / 2e-62 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G167600 [exp] 220 / 9e-67 AT3G47500 257 / 2e-80 cycling DOF factor 3 (.1) Potri.008G087800 [exp] 209 / 1e-62 AT3G47500 249 / 2e-77 cycling DOF factor 3 (.1) Potri.017G084600 [exp] 182 / 3e-52 AT5G39660 314 / 3e-102 cycling DOF factor 2 (.1.2) Potri.004G121800 [exp] 181 / 4e-52 AT3G47500 293 / 5e-94 cycling DOF factor 3 (.1) Potri.013G066700 [exp] 140 / 1e-36 AT3G47500 157 / 2e-42 cycling DOF factor 3 (.1) Potri.019G040700 [exp] 139 / 1e-36 AT5G39660 154 / 1e-41 cycling DOF factor 2 (.1.2) Potri.011G065900 [exp] 114 / 3e-30 AT1G29160 155 / 7e-49 Dof-type zinc finger DNA-binding family protein (.1) Potri.004G056900 [exp] 113 / 6e-30 AT1G29160 186 / 7e-61 Dof-type zinc finger DNA-binding family protein (.1) Potri.005G131600 [exp] 106 / 3e-26 AT3G50410 126 / 3e-35 OBF binding protein 1 (.1) Potri.014G036600 [exp] 105 / 7e-26 AT1G47655 128 / 2e-36 Dof-type zinc finger DNA-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02701 [flax] [poplar] zf-Dof Dof domain, zinc finger
Representative CDS sequence Show only first row Show all	>Lus10037167 pacid=23152266 polypeptide=Lus10037167 locus=Lus10037167.g ID=Lus10037167.BGIv1.0 annot-version=v1.0 ATGTCGGATTTCAAGCTTTTCGGTCAGACGATTCTGTTTCCCCTCCATGAACAGCAGCAGCAGAGGAGGGGAGTTGAAGACGGCTCTTCTTTTTCTTCGT CTACTTCTTCTGGTAGTAACCATGATCGAGAAGAAGATGAAGAAGCTTGTTTGGATGAGAGATGTTCTGGAAGTGAAGGGGACGCAAACATGGATCAGTC AGGAAACGATGAAACTAACGATGAAAATCGAGGGATCGGGAGCTCGAAAGATCACAAACAATCAGGCGATAAAGGAGGCAAGAGTGATCAGAGTGAGACC ACAACTAGCAGCTCACAACAACAGCAACAAGATAAGACATTGAAGAAGCCAGACAAGATCCTACCTTGTCCGAGATGCAACAGCATGGAGACCAAGTTCT GCTACTACAACAATTACAATGTTAACCAGCCGCGACATTTCTGCAAGAACTGTCAGCGGTATTGGACAGCTGGTGGCACGATGAGGAACGTCCCTGTTGG TGCTGGAAGGCGCAAGAACAAGGCCACTTCGTCGACTGCTGTCTCGCAACAGCAGCAGCAGTATAATCAGATCATAGTCTCTGAAGCTTTGAGGTCAGCT CATCACCAGTCACATGTTATGAATGGTGGTGGTACGACCTTGCTTAGTTTCCAGTCTGATTCCCCACTTTGCGAATCGGTGGCTTCGATCTTGAACATCT CCGAGAGTGCACAAGCCGGTTTCCAGCCTCGTAGAGGTGCAACTGGTAATGTGGATGATTGCTCAGGTGGGTTTTCGGTCACAGGCTCGAATTCATCAGA CAAGGTAGTCAACAGTTGTCAAGGGTTTTCGTGGCCTTTCGCAGTGCCTCCACCGGGGTTCTGCCCTCCAGGGTACCCGATTTCGTTCTATCCGGCACCG GTACCTGTACCGCCACCTTACTGGGGTTGTGCTGCAGTTCCAGCAATCCCTTGGAATGGAGCACAATGTGTGACCCCCTTAAGCCCGAAGGCAGCATCGA GCACGAACTCGAGCCCGGCCACTTCCCCGTTGGGAAAGCATAGCAGGGACGGGGGCGAATTCGTAAGGTCGGACGATGGTGGATTGTCAGAAGAGCCACC GTTGCGGAAGATGAGCAACGCGAGTAGCAGCTCGAATAGAAGGGTTGTGGTTCCCAAGACACTGAGGATCGACGATCCAAACGATGCTGCCAAGAGCTCG ATATGA
AA sequence Show only first row Show all	>Lus10037167 pacid=23152266 polypeptide=Lus10037167 locus=Lus10037167.g ID=Lus10037167.BGIv1.0 annot-version=v1.0 MSDFKLFGQTILFPLHEQQQQRRGVEDGSSFSSSTSSGSNHDREEDEEACLDERCSGSEGDANMDQSGNDETNDENRGIGSSKDHKQSGDKGGKSDQSET TTSSSQQQQQDKTLKKPDKILPCPRCNSMETKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKATSSTAVSQQQQQYNQIIVSEALRSA HHQSHVMNGGGTTLLSFQSDSPLCESVASILNISESAQAGFQPRRGATGNVDDCSGGFSVTGSNSSDKVVNSCQGFSWPFAVPPPGFCPPGYPISFYPAP VPVPPPYWGCAAVPAIPWNGAQCVTPLSPKAASSTNSSPATSPLGKHSRDGGEFVRSDDGGLSEEPPLRKMSNASSSSNRRVVVPKTLRIDDPNDAAKSS I

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39660	DOF	CDF2, AtDof5. 2	cycling DOF factor 2 (.1.2)		Lus10037167 [exp]	0	1
AT5G39660	DOF	CDF2, AtDof5. 2	cycling DOF factor 2 (.1.2)		Lus10036760 [exp]	1.0	0.9407
AT1G18330	MYB	RVE7, EPR1	REVEILLE 7, EARLY-PHYTOCHROME-...		Lus10026365 [exp]	3.5	0.8108
AT1G01060	MYB	LHY, LHY1	LATE ELONGATED HYPOCOTYL 1, LA...		Lus10030183 [exp]	5.2	0.7706
AT1G01060	MYB	LHY, LHY1	LATE ELONGATED HYPOCOTYL 1, LA...		Lus10005134 [exp]	6.0	0.7672
AT3G09600	MYB	LCL5 (LHY-CCA1-...	REVEILLE 8, LHY-CCA1-LIKE5, Ho...		Lus10019902 [exp]	7.0	0.7477
AT4G25700		BCH1, B1, CHY1,...	BETA CAROTENOID HYDROXYLASE 1,...		Lus10039278 [exp]	7.7	0.6842
AT3G12320			unknown protein		Lus10024129 [exp]	8.5	0.7483
AT3G54500			unknown protein		Lus10024170 [exp]	8.7	0.7527
AT3G12320			unknown protein		Lus10005384 [exp]	10.0	0.7339
AT1G01060	MYB	LHY, LHY1	LATE ELONGATED HYPOCOTYL 1, LA...		Lus10030184 [exp]	11.5	0.7155

Compare expression of checked genes

Lus10037167 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.