Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26800 125 / 6e-36 RING/U-box superfamily protein (.1) AT1G14200 110 / 3e-30 RING/U-box superfamily protein (.1) AT3G19950 87 / 2e-20 RING/U-box superfamily protein (.1) AT5G56340 86 / 2e-19 ATCRT1 RING/U-box superfamily protein (.1) AT4G26400 81 / 8e-18 RING/U-box superfamily protein (.1.2) AT3G46620 80 / 1e-17 zinc finger (C3HC4-type RING finger) family protein (.1) AT5G59550 80 / 2e-17 zinc finger (C3HC4-type RING finger) family protein (.1) AT3G13430 79 / 3e-17 RING/U-box superfamily protein (.1.2.3) AT1G55530 77 / 1e-16 RING/U-box superfamily protein (.1) AT5G15820 77 / 1e-16 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036757 [exp] 323 / 6e-114 AT1G26800 127 / 1e-36 RING/U-box superfamily protein (.1) Lus10012819 [exp] 168 / 3e-52 AT1G26800 182 / 6e-58 RING/U-box superfamily protein (.1) Lus10030464 [exp] 164 / 2e-50 AT1G26800 181 / 3e-57 RING/U-box superfamily protein (.1) Lus10013397 [exp] 90 / 6e-21 AT5G56340 330 / 5e-111 RING/U-box superfamily protein (.1) Lus10002637 [exp] 89 / 1e-20 AT1G55530 257 / 4e-82 RING/U-box superfamily protein (.1) Lus10020258 [exp] 87 / 6e-20 AT1G19800 469 / 4e-161 ATP-binding cassette I14, trigalactosyldiacylglycerol 1 (.1.2.3) Lus10031422 [exp] 81 / 4e-18 AT5G64920 210 / 5e-66 COP1-interacting protein 8 (.1) Lus10010179 [exp] 80 / 5e-18 AT3G19950 285 / 6e-96 RING/U-box superfamily protein (.1) Lus10040783 [exp] 71 / 9e-15 AT5G59550 228 / 1e-72 zinc finger (C3HC4-type RING finger) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G087200 [exp] 157 / 2e-48 AT1G26800 194 / 6e-63 RING/U-box superfamily protein (.1) Potri.010G168300 [exp] 156 / 8e-48 AT1G26800 195 / 4e-63 RING/U-box superfamily protein (.1) Potri.019G032500 [exp] 94 / 2e-22 AT5G56340 177 / 1e-51 RING/U-box superfamily protein (.1) Potri.013G060500 [exp] 92 / 7e-22 AT1G55530 207 / 2e-64 RING/U-box superfamily protein (.1) Potri.004G122000 [exp] 85 / 5e-21 AT1G26800 94 / 1e-24 RING/U-box superfamily protein (.1) Potri.005G090500 [exp] 84 / 2e-19 AT3G19950 279 / 4e-93 RING/U-box superfamily protein (.1) Potri.003G223200 [exp] 83 / 1e-18 AT5G56340 301 / 3e-99 RING/U-box superfamily protein (.1) Potri.007G074014 [exp] 82 / 2e-18 AT3G19950 278 / 5e-93 RING/U-box superfamily protein (.1) Potri.001G001500 [exp] 81 / 4e-18 AT5G56340 323 / 2e-108 RING/U-box superfamily protein (.1) Potri.015G028400 [exp] 80 / 9e-18 AT3G19950 256 / 2e-83 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10037170 pacid=23152255 polypeptide=Lus10037170 locus=Lus10037170.g ID=Lus10037170.BGIv1.0 annot-version=v1.0 ATGGCTTCCGACGCCGACACCCCCGAACTGACCGCCGTCTACAACCGCCTTCTCGAACGGCACAGAAACCTCTCTCTAGTCGTACCGTTCTTCTACGGCC TCGCCACACCACCAGGAGAAGAAGAAGCCCCACAACTGCAGAACCCTCTACTAGGACCCGAACCATCAAATCAGGGCTCCGTGGTTAGGGATTTGGATGC CGTGATTAGGGATTTCTTGCTGGACACGAGACGCAACGGCGGCGGCGGATTCCGTGGCCTGCCGCCTGCTTCCAAGGCATCGATTGAGGGGATGCCGAGC GTGGAGATCGGTGAGGATTGTGGGATTGAGGAGTGTGTGATCTGTTTGGTACAGTGGAGTCAAGGTGAGGTTGTAAAGGAGATGCCCTGTAAGCATAGGT TCCACGGTGGATGTGTGGAAAAGTGGCTTGGAGTTCATGGCTCTTGCCCTGTTTGCAGATTTCAGATGCCTGCCGAGGAATTGGAGAAGAAGATGATTGA TGAGGAAGAAGGAAGGAGGAGAATTGAAAGAGATCTTTTTAGTGCTTTCTCCATTGGTGGTTCTAGTACTGATTCTAATGGTGCTGGTTCTTCGTCAACC AATGCTGGTTCTGAGATTAGGGATTAG
AA sequence Show only first row Show all	>Lus10037170 pacid=23152255 polypeptide=Lus10037170 locus=Lus10037170.g ID=Lus10037170.BGIv1.0 annot-version=v1.0 MASDADTPELTAVYNRLLERHRNLSLVVPFFYGLATPPGEEEAPQLQNPLLGPEPSNQGSVVRDLDAVIRDFLLDTRRNGGGGFRGLPPASKASIEGMPS VEIGEDCGIEECVICLVQWSQGEVVKEMPCKHRFHGGCVEKWLGVHGSCPVCRFQMPAEELEKKMIDEEEGRRRIERDLFSAFSIGGSSTDSNGAGSSST NAGSEIRD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26800			RING/U-box superfamily protein...		Lus10037170 [exp]	0	1
AT1G47056		VFB1	VIER F-box proteine 1 (.1)		Lus10018737 [exp]	3.0	0.8756
AT1G50640	AP2_ERF	ATERF3	ethylene responsive element bi...		Lus10031526 [exp]	3.7	0.8528
AT1G54115		ATCCX4	cation calcium exchanger 4 (.1...		Lus10037681 [exp]	3.7	0.8714
AT2G21600		ATRER1B	endoplasmatic reticulum retrie...		Lus10028319 [exp]	6.0	0.8427
AT4G11150		TUFF, EMB2448, ...	embryo defective 2448, vacuola...		Lus10033934 [exp]	6.7	0.8641
AT1G70000	MYB		myb-like transcription factor ...		Lus10010733 [exp]	10.4	0.8540
AT5G57900		SKIP1	SKP1 interacting partner 1 (.1...		Lus10034452 [exp]	10.8	0.8386
AT3G06780			glycine-rich protein (.1)		Lus10016828 [exp]	11.4	0.8460
AT3G51040		RTH	RTE1-homolog (.1.2.3)		Lus10028350 [exp]	12.0	0.8258
AT1G44414			unknown protein		Lus10025672 [exp]	12.8	0.8579

Compare expression of checked genes

Lus10037170 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.