Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26810 764 / 0 GALT1 galactosyltransferase1 (.1) AT3G06440 500 / 3e-172 Galactosyltransferase family protein (.1.2) AT1G74800 339 / 1e-108 Galactosyltransferase family protein (.1) AT5G62620 329 / 1e-104 Galactosyltransferase family protein (.1.2) AT1G27120 321 / 8e-102 Galactosyltransferase family protein (.1) AT4G21060 308 / 8e-97 Galactosyltransferase family protein (.1.2) AT3G14960 86 / 6e-18 Galactosyltransferase family protein (.1) AT2G26100 82 / 2e-16 Galactosyltransferase family protein (.1) AT1G53290 81 / 2e-16 Galactosyltransferase family protein (.1) AT1G33430 67 / 1e-11 Galactosyltransferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036756 [exp] 1104 / 0 AT1G26810 831 / 0.0 galactosyltransferase1 (.1) Lus10012822 [exp] 997 / 0 AT1G26810 828 / 0.0 galactosyltransferase1 (.1) Lus10030467 [exp] 969 / 0 AT1G26810 780 / 0.0 galactosyltransferase1 (.1) Lus10032650 [exp] 541 / 0 AT3G06440 659 / 0.0 Galactosyltransferase family protein (.1.2) Lus10043102 [exp] 470 / 2e-160 AT3G06440 575 / 0.0 Galactosyltransferase family protein (.1.2) Lus10004256 [exp] 324 / 7e-103 AT5G62620 961 / 0.0 Galactosyltransferase family protein (.1.2) Lus10036154 [exp] 323 / 2e-102 AT4G21060 963 / 0.0 Galactosyltransferase family protein (.1.2) Lus10042164 [exp] 317 / 2e-100 AT5G62620 961 / 0.0 Galactosyltransferase family protein (.1.2) Lus10037238 [exp] 306 / 8e-96 AT5G62620 881 / 0.0 Galactosyltransferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G168500 [exp] 902 / 0 AT1G26810 857 / 0.0 galactosyltransferase1 (.1) Potri.008G086900 [exp] 900 / 0 AT1G26810 829 / 0.0 galactosyltransferase1 (.1) Potri.010G151600 [exp] 572 / 0 AT3G06440 702 / 0.0 Galactosyltransferase family protein (.1.2) Potri.006G011300 [exp] 337 / 1e-107 AT4G21060 1005 / 0.0 Galactosyltransferase family protein (.1.2) Potri.016G013300 [exp] 336 / 1e-107 AT4G21060 1000 / 0.0 Galactosyltransferase family protein (.1.2) Potri.012G072400 [exp] 333 / 6e-106 AT5G62620 905 / 0.0 Galactosyltransferase family protein (.1.2) Potri.015G067600 [exp] 321 / 8e-102 AT5G62620 920 / 0.0 Galactosyltransferase family protein (.1.2) Potri.010G040400 [exp] 301 / 2e-94 AT5G62620 858 / 0.0 Galactosyltransferase family protein (.1.2) Potri.006G228900 [exp] 82 / 9e-17 AT2G26100 452 / 1e-159 Galactosyltransferase family protein (.1) Potri.001G392700 [exp] 81 / 3e-16 AT1G53290 452 / 3e-160 Galactosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01762 [flax] [poplar] Galactosyl_T Galactosyltransferase CL0004 [flax] [poplar] Concanavalin PF00337 [flax] [poplar] Gal-bind_lectin Galactoside-binding lectin
Representative CDS sequence Show only first row Show all	>Lus10037171 pacid=23152537 polypeptide=Lus10037171 locus=Lus10037171.g ID=Lus10037171.BGIv1.0 annot-version=v1.0 ATGGACACATGGCATCTGTTGGAAGGCTTGGCTAATGGTTCGCAGGCCTTACCAAATGGATTAGATGCCATCAAGGAAGCTGTCAGTGCATGGAATAATC TGATGGCTTCAGTCGAAGAGGAGAAACTTATTTATGCAAATGACAGCTCAAATAGGAGAGCCAAGGAAAAGCAATGCCCTCATTTTCTTAACAAAATGAA TGCAACGGTGAATCATGACAGTGGTTTTAGATTGAGACTCCCTTGTGGGTTGACTCAGGGATCTTCAATTACAATAATTGGGAACCCGGAAGGTCTTCTC GGTAATTTTCATATCGAGTTGATTGGGGAATCGCTGCCAGGGGAGCCTGATCCACCTATCATATATCATTACAATGTGAGGCTAAATGGTGACAAAGTAA CTGATGATCCAGTTATAGTTCAGAACACCTGGACTGCAGCTCATGATTGGGGTGAAGAGGAACGCTGTCCATCTTCATCACCTCAGAAAATCAAGAAAGT GGACGAGCTGGACCAATGTAACAAGGTGGTCGGTAAAAATACTACTCGAATCCATGGAGATGGTTCAAGGAGGTCTGCAATGGTTCAGGATGGATCCAAA CTCAGAACATATTTCCCATTCAAGCAAGGTTATGTATCTGTTATGACCCTCAGAGTAGGATCAGAGGGAATCCAGACGACAGTTGATGGAAAGCATATTA CTTCGTTTGCATATCGTGAAACTTTGGAGCCATGGCTTGTGAGTGAAGTTAGGACTTCCGGCGACCTGAAGCTAATATCTGTACTGGCTAGCGGTCTCCC TACAGTTGAGGATTCGGACCATTCTGTAGATTTTGAAGCACTGAAAGCATCTCCTCTTTCTCTTAAGCAAACATTAGATCTTTTCATCGGTGTCTTCTCC AATGCGAACAATTTCAAGCGCAGGATGGCTGTTCGAAGAACATGGATGCAATATGCTGCTGTGCATTCTGGAGCAGTTGCAGTACGATTTTTCGTTGGTC TGCATAAGAATCAAATAGTAAACGAGGAACTGTGGAACGAGGCAAGAACGTACGGGGACGTACAACTGATGCCTTTTGTTGACTACTACAATCTCATTAC TTGGAAAACTTTAGGAATATGCATATTTGGGACACAAGTTGCATCTGCGAAATATGTAATGAAGACGGATGACGATGCATTCGTTCGTGTGGATGAAGTC CTCTCTTCACTAAAGAGAGTCAACGTGAATCACGGACTTCTGTATGGGCTCATCAACGCAGATTCACAACCGCATCGAAATCCTGATAGCAAGTGGTACA TTAGTACTGAGGAATGGAAAGAGAGCAAATACCCGCCTTGGGCGCACGGTCCCGGTTATGTCATCTCTCAAGACATAGCAAGGGCCGTTTACAAGAAACA CAAGGAAGGTCATTTGAAGATCTTTAAGCTAGAAGATGTAGCAATGGGAATATGGATCGCTGAAATGAAAAATGAAGGCATGAACGTTCGCTACGAAAAG GAAGAGAGAGTCTGCAACGAAGGCTGCCGAGATGGCTACATCGTTGCTCACTATCAAACACCGAGGGACATGCTCTGTCTCTGGCAGAAGATCCAGGATG GAAATGGAGCCAAATGCTGCCGAGATTGA
AA sequence Show only first row Show all	>Lus10037171 pacid=23152537 polypeptide=Lus10037171 locus=Lus10037171.g ID=Lus10037171.BGIv1.0 annot-version=v1.0 MDTWHLLEGLANGSQALPNGLDAIKEAVSAWNNLMASVEEEKLIYANDSSNRRAKEKQCPHFLNKMNATVNHDSGFRLRLPCGLTQGSSITIIGNPEGLL GNFHIELIGESLPGEPDPPIIYHYNVRLNGDKVTDDPVIVQNTWTAAHDWGEEERCPSSSPQKIKKVDELDQCNKVVGKNTTRIHGDGSRRSAMVQDGSK LRTYFPFKQGYVSVMTLRVGSEGIQTTVDGKHITSFAYRETLEPWLVSEVRTSGDLKLISVLASGLPTVEDSDHSVDFEALKASPLSLKQTLDLFIGVFS NANNFKRRMAVRRTWMQYAAVHSGAVAVRFFVGLHKNQIVNEELWNEARTYGDVQLMPFVDYYNLITWKTLGICIFGTQVASAKYVMKTDDDAFVRVDEV LSSLKRVNVNHGLLYGLINADSQPHRNPDSKWYISTEEWKESKYPPWAHGPGYVISQDIARAVYKKHKEGHLKIFKLEDVAMGIWIAEMKNEGMNVRYEK EERVCNEGCRDGYIVAHYQTPRDMLCLWQKIQDGNGAKCCRD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26810		GALT1	galactosyltransferase1 (.1)		Lus10037171 [exp]	0	1
AT1G69420			DHHC-type zinc finger family p...		Lus10026632 [exp]	6.7	0.7679
AT3G11950		ATHST	TRAF-like superfamily protein ...		Lus10029325 [exp]	13.5	0.7724
AT5G58300			Leucine-rich repeat protein ki...		Lus10019113 [exp]	23.3	0.7457
AT1G78530			Protein kinase superfamily pro...		Lus10005569 [exp]	32.1	0.7352
AT1G30450		HAP5, ATCCC1, C...	HAPLESS 5, cation-chloride co-...		Lus10000067 [exp]	38.4	0.6927
AT1G26810		GALT1	galactosyltransferase1 (.1)		Lus10036756 [exp]	44.7	0.7246
AT1G32930			Galactosyltransferase family p...		Lus10033248 [exp]	66.9	0.6979
AT1G47670			Transmembrane amino acid trans...		Lus10003339 [exp]	75.0	0.6990
AT1G69420			DHHC-type zinc finger family p...		Lus10030426 [exp]	80.2	0.6774
AT3G51895		AST12, ATST1, S...	sulfate transporter 3;1 (.1)		Lus10039364 [exp]	81.1	0.7070

Compare expression of checked genes

Lus10037171 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.