Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02960 256 / 2e-85 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) AT3G47550 245 / 1e-80 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) AT5G62460 219 / 2e-70 RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G14260 207 / 3e-66 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT2G01275 125 / 1e-34 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT5G38070 114 / 3e-30 RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G02610 89 / 3e-21 RING/FYVE/PHD zinc finger superfamily protein (.1) AT4G02075 86 / 4e-20 PIT1 pitchoun 1, RING/FYVE/PHD zinc finger superfamily protein (.1) AT4G34100 54 / 5e-08 RING/U-box superfamily protein (.1.2) AT4G32670 54 / 6e-08 RING/FYVE/PHD zinc finger superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036754 [exp] 391 / 1e-138 AT2G02960 315 / 1e-108 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Lus10012826 [exp] 335 / 3e-116 AT2G02960 310 / 2e-106 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Lus10019102 [exp] 284 / 5e-96 AT3G47550 295 / 5e-100 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Lus10034454 [exp] 282 / 4e-95 AT3G47550 296 / 8e-101 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Lus10021670 [exp] 271 / 7e-91 AT3G47550 275 / 7e-92 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Lus10035010 [exp] 262 / 2e-87 AT3G47550 284 / 8e-96 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Lus10030472 [exp] 255 / 3e-84 AT2G02960 221 / 4e-79 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Lus10002282 [exp] 139 / 2e-39 AT5G38070 219 / 6e-71 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10004058 [exp] 138 / 2e-39 AT2G01275 251 / 6e-84 RING/FYVE/PHD zinc finger superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G086300 [exp] 345 / 3e-120 AT2G02960 252 / 9e-84 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Potri.010G169200 [exp] 340 / 2e-118 AT3G47550 253 / 6e-84 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Potri.019G111700 [exp] 150 / 2e-44 AT2G02960 156 / 1e-46 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Potri.013G126600 [exp] 146 / 1e-42 AT2G02960 159 / 9e-48 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Potri.008G127400 [exp] 146 / 2e-42 AT2G01275 266 / 1e-89 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.010G115600 [exp] 142 / 7e-41 AT2G01275 248 / 1e-82 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.004G093500 [exp] 137 / 4e-39 AT2G01275 238 / 9e-79 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.017G122300 [exp] 128 / 9e-36 AT2G01275 246 / 4e-82 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.014G121900 [exp] 92 / 3e-22 AT1G02610 181 / 2e-57 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.002G196600 [exp] 84 / 2e-19 AT1G02610 183 / 2e-58 RING/FYVE/PHD zinc finger superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger) CL0229 [flax] [poplar] PF12428 [flax] [poplar] DUF3675 Protein of unknown function (DUF3675)
Representative CDS sequence Show only first row Show all	>Lus10037172 pacid=23152468 polypeptide=Lus10037172 locus=Lus10037172.g ID=Lus10037172.BGIv1.0 annot-version=v1.0 ATGAGCGATCGCCTCGTGACCCCGCCGGCGACGGCGGATGGAAAACTGGAAGTTTGCCCGGCGGCGGAAAAGACCGGCGCTTTTGCTGGTCCGTCGTGTT CTAGGTCGGAAGAAGAATTAGAAGGGGAGCATGAAGAGGATGAGCCGTTGATTCAAGGTGGGGATTGCCGAATTTGTCAAGAGGAGGATTCGATTCACAA TTTGGAATCTCCGTGTGGATGCAGCGGCAGCCTCAAGTATGCTCATAGGAAATGTGTACAACATTGGTACAATGAGAAAGGAGACATCACTTGTGAGATT TGTCATAAGCCTTATCAACCAGGGTATACAGCTCCACCTTGTCCCCCTCGCCCCGAAGACACTGTTATCGACATCGGAGGAGGATGGACGATCTCGGGGA CACCTATAGATCTACGAGACCCTCGTTTCCTTGCAATCGCAGAGGCAGAACGCGATTTCCTCGAAACTGAGTACGACGAGTACGCTGCTTCGAACGCGAG CGGAGCTGCATTCTGCCGCTCTGCTGCGCTAATCCTGATGGCACTTCTCCTATTACGACACGCATTGACTGTTAGCGAAGCTGATGATGATGATGATGTT TCTACCTTCTTCCCTCTTTTCTTACTACGAGCGGCGGGTTTCCTACTGCCGTGTTACATCATGGCTTGGGCTGTTAGCATCTTGCAAAGAAGAAGGCAGC GACAAGAAGCTGCAGCGTTAGCAGTTACACAGGTTGCGTTCGTGCTGCAACCGGGACAGCGTCGAGGTGTGCATTTCACGATAGCGTCTGGACCACCGGT AGCTGCGCATCAAGAACCCGTTTAA
AA sequence Show only first row Show all	>Lus10037172 pacid=23152468 polypeptide=Lus10037172 locus=Lus10037172.g ID=Lus10037172.BGIv1.0 annot-version=v1.0 MSDRLVTPPATADGKLEVCPAAEKTGAFAGPSCSRSEEELEGEHEEDEPLIQGGDCRICQEEDSIHNLESPCGCSGSLKYAHRKCVQHWYNEKGDITCEI CHKPYQPGYTAPPCPPRPEDTVIDIGGGWTISGTPIDLRDPRFLAIAEAERDFLETEYDEYAASNASGAAFCRSAALILMALLLLRHALTVSEADDDDDV STFFPLFLLRAAGFLLPCYIMAWAVSILQRRRQRQEAAALAVTQVAFVLQPGQRRGVHFTIASGPPVAAHQEPV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02960			RING/FYVE/PHD zinc finger supe...		Lus10037172 [exp]	0	1
AT2G27600		ATSKD1, VPS4, S...	VACUOLAR PROTEIN SORTING 4, SU...		Lus10004891 [exp]	1.0	0.9276
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Lus10033818 [exp]	1.4	0.9107
AT1G07710			Ankyrin repeat family protein ...		Lus10003748 [exp]	4.6	0.8897
AT4G28880		CKL3	casein kinase I-like 3 (.1)		Lus10011113 [exp]	5.8	0.8910
AT4G19185			nodulin MtN21 /EamA-like trans...		Lus10033316 [exp]	5.8	0.8759
AT5G37600		ATGLN1;1, GLN1;...	ARABIDOPSIS THALIANA GLUTAMINE...		Lus10010203 [exp]	6.7	0.9104
AT2G02970			GDA1/CD39 nucleoside phosphata...		Lus10012825 [exp]	7.0	0.9028
AT5G42190		SKP1B, ASK2	Arabidopsis SKP-like 2, E3 ubi...		Lus10017282 [exp]	7.5	0.9089
AT1G16180			Serinc-domain containing serin...		Lus10008709 [exp]	7.7	0.8989
AT4G25150			HAD superfamily, subfamily III...		Lus10007939 [exp]	8.7	0.8725

Compare expression of checked genes

Lus10037172 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.