Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39785 333 / 1e-105 Protein of unknown function (DUF1666) (.1), Protein of unknown function (DUF1666) (.2) AT1G69610 295 / 5e-91 Protein of unknown function (DUF1666) (.1) AT3G20260 142 / 3e-36 Protein of unknown function (DUF1666) (.1) AT1G73850 105 / 2e-23 Protein of unknown function (DUF1666) (.1) AT3G01175 76 / 2e-14 Protein of unknown function (DUF1666) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036751 [exp] 1032 / 0 AT5G39785 328 / 7e-104 Protein of unknown function (DUF1666) (.1), Protein of unknown function (DUF1666) (.2) Lus10015368 [exp] 327 / 4e-102 AT5G39785 445 / 3e-148 Protein of unknown function (DUF1666) (.1), Protein of unknown function (DUF1666) (.2) Lus10007264 [exp] 295 / 3e-90 AT5G39785 411 / 2e-135 Protein of unknown function (DUF1666) (.1), Protein of unknown function (DUF1666) (.2) Lus10034809 [exp] 112 / 4e-26 AT3G20260 487 / 3e-171 Protein of unknown function (DUF1666) (.1) Lus10033354 [exp] 109 / 2e-25 AT3G20260 462 / 5e-162 Protein of unknown function (DUF1666) (.1) Lus10038936 [exp] 106 / 6e-24 AT1G73850 457 / 4e-155 Protein of unknown function (DUF1666) (.1) Lus10027226 [exp] 101 / 3e-22 AT1G73850 455 / 5e-153 Protein of unknown function (DUF1666) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G126800 [exp] 372 / 5e-119 AT5G39785 462 / 2e-154 Protein of unknown function (DUF1666) (.1), Protein of unknown function (DUF1666) (.2) Potri.017G082300 [exp] 372 / 3e-118 AT5G39785 462 / 1e-153 Protein of unknown function (DUF1666) (.1), Protein of unknown function (DUF1666) (.2) Potri.017G084200 [exp] 141 / 1e-35 AT3G01175 140 / 1e-36 Protein of unknown function (DUF1666) (.1) Potri.008G004400 [exp] 135 / 3e-34 AT3G20260 426 / 3e-147 Protein of unknown function (DUF1666) (.1) Potri.015G046900 [exp] 119 / 3e-28 AT1G73850 416 / 2e-138 Protein of unknown function (DUF1666) (.1) Potri.012G056400 [exp] 107 / 3e-24 AT1G73850 397 / 5e-131 Protein of unknown function (DUF1666) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07891 [flax] [poplar] DUF1666 Protein of unknown function (DUF1666)
Representative CDS sequence Show only first row Show all	>Lus10037176 pacid=23152509 polypeptide=Lus10037176 locus=Lus10037176.g ID=Lus10037176.BGIv1.0 annot-version=v1.0 ATGGCTGGATTCATGGAAGAGCCGAGGATTTTGAAGTTCGCCATCTGTGAAGCTTACGTGGACGAAGAGAAATTAATGAATTTTTCGGAAGGTAAGGATT TTCGAGAGGACGAATTCGATTCGGAGAACGGTTGGGACTTCTTCGATCTTCGGTGGCTGATCGATTCGAATGCGAAATCGTCGAAATTGATCAGCGATCC TGACGATGTTACGACTGAGGATGATGATGATGAAGAAGATATTCGGTTCGGGTTTTCGACGGAAGAAGAGGATCAATTTTCAGGAAATGGATTGGAATCT GTGGTAGAGACAGTTTCTAGCGAAGAGGAATTGATCTCAGAGATTGACGGCACAGATGATTTGGTGAGAGACCCAGAATTTAAAACAGAGGAACCAGAGT TAAAAACAGAGGAACCTGAGTTAAAAACAGAGGAATCTGTTTCTGGTATAGAGATTGATGAAGAATCTTCAGGTGGAAGACTGTCAGTAGAGAGTGATCA AGAAGCTGAATCGAAGAAAGAAAGCTTCGTTTCAACAGAAATTGAAATTCCTCCTCCTGTCCATTTCCATTTCTTCTTTCCTTACAGGACAGTTTACGAA GAAGGATCCAACCCCAAAATTTCCAATGAAGATGAATTAGATGATGAGGACTTCATAGAAATTGAGCCAGGGAAGCATAATTCAGATTCCTCCTCTGGGT TTGATCAATCCGCCGAGGAGATCGATCTGGTCCAGGAACCGGTTATCGATAATCAAGAGGAGCCGGTTGAGATGGGCTTCGACTCGACTTGGTCAGGAGG TGATGAAGATGATGATAGGGATGCACTGTGGGAGCATTGTGAGATAGTGGAGCAGTTGAAGATGGAGCTGAGGCAGGCGAGAAACGGCGGATTACCGACA ATTCCGGAGGAAGAATCGGAGACTGAAGAACAACCAGTCGATTCTCCAAAGGTGGTTCTGGAACTGAAGCCATTGAAGATTGATGAAAAAGTTGGGTATA AAGATCTTACTGACAGTGTTCAGAAGGTTTACAGGAATTATTCTGACAGGATGAGGAAGCTTGATATCTTGAATTTCCAGACAATGCATGGTGCTGGTCT ACTTAATCTGAAGGATGCGGTGTTGTTATCGCAGCCATCGAGAAAGTCCTCGATCCCAGCGATGGTGTTGCAGAACTTGTTCAAGCTAGGGAAGTCGTCG GTAGAGCCGATGAGGAAGATTGTGGTGGAAATGCAGCGAGATTTCGAGGTCATTTACGTAGGCCAGCTCTGCCTTTCGTGGGAGATACTTCACTGGCAGT TCTGGAAATCTCAAGAGCTGATGAACTTCGATCATCCTCGTCGCTACAATCAGGTTGCTGGCGAATTCCAGCTGTTCCAGGTCTTGCTGCAACGATTCGT CGAGAACGAGCCTTTCCAGGGACGTCCTAGGGTTTATAACTACGTTCAGGATCGGTGCGTTGTTCGAAACCTTCTTCAGGTTCCAATGGTCAAAGATGAT TGCTTGAAGGACAAGGAAAAGGGAGACCGAGACTACGAACTCGTAATCACTAGCGAAATCCTGGGAGACATCATGGATCAATCGATACGGCTCTTCTGGG ATTTCCTTCGAGCCGATAACGAAACCAACCCGCCGGCACATCTTCATCCCCAAGATGATCCTGTGCACTTGGAGCTCTTTCATGAAATCAGAACCGAGTT TCAGAAGAAGGATAAGAAGCTGAAGGAGATAATGAAGACAGGGAATTGCTTGCTGAAGAAGTTTCAGAGGAACCAAGGTGCTCAAGAGTGCAGAAAGCAG ATGGAAATGGTGGTGGCTCAGGTTGAGCTGAAGCTGGTTTCTAGGGTTCTAAGCATGAACAAAGTAACAGCTGAGCAGCTGATTTGGTGCCATGAGAAAT TAGGGAAGGTTAGTTTGTGTAATAGGAAAGTTAGTGTTGAGCCTTCTTTTGTTCTCTTCCCTTGCTAA
AA sequence Show only first row Show all	>Lus10037176 pacid=23152509 polypeptide=Lus10037176 locus=Lus10037176.g ID=Lus10037176.BGIv1.0 annot-version=v1.0 MAGFMEEPRILKFAICEAYVDEEKLMNFSEGKDFREDEFDSENGWDFFDLRWLIDSNAKSSKLISDPDDVTTEDDDDEEDIRFGFSTEEEDQFSGNGLES VVETVSSEEELISEIDGTDDLVRDPEFKTEEPELKTEEPELKTEESVSGIEIDEESSGGRLSVESDQEAESKKESFVSTEIEIPPPVHFHFFFPYRTVYE EGSNPKISNEDELDDEDFIEIEPGKHNSDSSSGFDQSAEEIDLVQEPVIDNQEEPVEMGFDSTWSGGDEDDDRDALWEHCEIVEQLKMELRQARNGGLPT IPEEESETEEQPVDSPKVVLELKPLKIDEKVGYKDLTDSVQKVYRNYSDRMRKLDILNFQTMHGAGLLNLKDAVLLSQPSRKSSIPAMVLQNLFKLGKSS VEPMRKIVVEMQRDFEVIYVGQLCLSWEILHWQFWKSQELMNFDHPRRYNQVAGEFQLFQVLLQRFVENEPFQGRPRVYNYVQDRCVVRNLLQVPMVKDD CLKDKEKGDRDYELVITSEILGDIMDQSIRLFWDFLRADNETNPPAHLHPQDDPVHLELFHEIRTEFQKKDKKLKEIMKTGNCLLKKFQRNQGAQECRKQ MEMVVAQVELKLVSRVLSMNKVTAEQLIWCHEKLGKVSLCNRKVSVEPSFVLFPC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39785			Protein of unknown function (D...		Lus10037176 [exp]	0	1
AT1G13900			Purple acid phosphatases super...		Lus10004661 [exp]	2.2	0.9648
AT5G42710			unknown protein		Lus10010807 [exp]	4.5	0.9525
AT1G07120			unknown protein		Lus10031863 [exp]	4.6	0.9453
AT5G39785			Protein of unknown function (D...		Lus10036751 [exp]	5.1	0.9338
AT4G28500	NAC	ANAC073, SND2, ...	SECONDARY WALL-ASSOCIATED NAC ...		Lus10015392 [exp]	6.9	0.9429
AT1G25530			Transmembrane amino acid trans...		Lus10041482 [exp]	8.0	0.9450
AT2G29550		TUB7	tubulin beta-7 chain (.1)		Lus10038458 [exp]	8.4	0.9446
AT2G38820			Protein of unknown function (D...		Lus10018754 [exp]	9.4	0.9359
AT4G27350			Protein of unknown function (D...		Lus10038565 [exp]	10.6	0.9421
AT4G28500	NAC	ANAC073, SND2, ...	SECONDARY WALL-ASSOCIATED NAC ...		Lus10013967 [exp]	19.3	0.9299

Compare expression of checked genes

Lus10037176 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.