Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26870 302 / 3e-98 NAC FEZ, ANAC009 FEZ, Arabidopsis NAC domain containing protein 9, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT5G39820 293 / 4e-96 NAC ANAC094 NAC domain containing protein 94 (.1) AT2G43000 229 / 6e-72 NAC ANAC042, JUB1, JUNGBRUNNEN1 NAC domain containing protein 42 (.1) AT3G12910 205 / 2e-62 NAC NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT3G15510 194 / 2e-57 NAC ATNAC2, ANAC056, NARS1 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) AT2G02450 192 / 5e-56 NAC LOV1, ANAC034, ANAC035 LONG VEGETATIVE PHASE 1, Arabidopsis NAC domain containing protein 34, NAC domain containing protein 35 (.1.2) AT1G61110 187 / 4e-55 NAC ANAC025 NAC domain containing protein 25 (.1) AT1G69490 182 / 6e-54 NAC NAP, ANAC029, ATNAP Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) AT5G08790 182 / 1e-53 NAC ATAF2, ANAC081 Arabidopsis NAC domain containing protein 81, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT1G01720 181 / 2e-53 NAC ATAF1, ANAC002 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036749 [exp] 692 / 0 AT1G26870 306 / 4e-100 FEZ, Arabidopsis NAC domain containing protein 9, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10030478 [exp] 340 / 5e-113 AT5G39820 297 / 4e-98 NAC domain containing protein 94 (.1) Lus10015367 [exp] 307 / 2e-101 AT1G26870 298 / 8e-99 FEZ, Arabidopsis NAC domain containing protein 9, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10007263 [exp] 304 / 3e-100 AT5G39820 300 / 3e-100 NAC domain containing protein 94 (.1) Lus10031189 [exp] 236 / 1e-73 AT3G12910 264 / 9e-87 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10031767 [exp] 222 / 4e-70 AT2G43000 236 / 3e-78 NAC domain containing protein 42 (.1) Lus10030446 [exp] 197 / 9e-60 AT1G69490 302 / 2e-103 Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) Lus10007410 [exp] 196 / 3e-58 AT3G15510 241 / 1e-78 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) Lus10042531 [exp] 196 / 4e-58 AT3G04070 303 / 4e-101 NAC domain containing protein 47 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G082000 [exp] 326 / 4e-108 AT1G26870 299 / 3e-98 FEZ, Arabidopsis NAC domain containing protein 9, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.004G126901 [exp] 322 / 2e-106 AT5G39820 305 / 1e-101 NAC domain containing protein 94 (.1) Potri.007G066300 [exp] 229 / 8e-72 AT3G12910 269 / 2e-89 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.002G057200 [exp] 229 / 1e-71 AT2G43000 282 / 4e-95 NAC domain containing protein 42 (.1) Potri.005G098000 [exp] 229 / 1e-71 AT3G12910 271 / 2e-90 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.001G080900 [exp] 220 / 2e-68 AT2G43000 257 / 3e-85 NAC domain containing protein 42 (.1) Potri.003G149700 [exp] 218 / 2e-67 AT2G43000 245 / 2e-80 NAC domain containing protein 42 (.1) Potri.005G205400 [exp] 218 / 3e-67 AT2G43000 269 / 6e-90 NAC domain containing protein 42 (.1) Potri.011G046700 [exp] 201 / 2e-60 AT1G61110 331 / 8e-113 NAC domain containing protein 25 (.1) Potri.004G038000 [exp] 200 / 7e-60 AT1G61110 332 / 3e-113 NAC domain containing protein 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10037178 pacid=23152340 polypeptide=Lus10037178 locus=Lus10037178.g ID=Lus10037178.BGIv1.0 annot-version=v1.0 ATGGATAGTACTGAGAGGAATAGTGGGAGTAGTTGTAGTAACACTAACAACAATAGTATGGTGGAGGTAGTTGACAAGATGGAGCAGCAGGAAGTGATGC TTCCGGGGTTCAGGTTCCACCCCACCGACGAAGAGCTTGTCGGGTTCTACCTCAAGAGGAAGATCCACCAACGACCTCTCTCCATCGAGCTCATCAAGCA ACTCGACATCTACAAGTTCGACCCCTGGGACCTCCCAAAAATGGCGACGACGGGGGAGAAAGAGTGGTACTTCTTCTGCCCGAGGGATAGGAAGTACAGG AACAGTGCGAGGCCGAACAGGGTGACCGGAGCCGGGTTCTGGAAGGCCACGGGGACTGACCGGCCGATTTACTCGTCGGAAGGGAACAAGTGCATAGGGT TGAAGAAGTCTTTGGTGTTTTACAAAGGAAGAGCTGCTAAAGGGTTCAAAACTGATTGGATGATGCATGAGTTCCGGCTGCCTTCTCTCTCCGACCACCA CCACGCTCCTGCTCCGGCCGCCGCCCCCTCCAAGCGCTTCCTCGACAAGACCATCCCTGCCAATGATGCATGGGCGATATGCAGGATATTCAAGAAGACG AACTCGACAGCGCAAAGAACACTCTCGCAGTCTTGGGTGTCGCCGATGGTTCAAGAAGTAGTACACCCAACAACATTCACAAGTGAAGGTGATGATCACT TCACCATGAATAGTAGTTCAATAACAATACCACCAACACCACCCATTCATTACTTCAACTACAACAACAATAACAACATTACCATAGACCACCAAACCCA TAACCAATATTCCTCACCAAGCTATAGCTACAACCAATACACCAATAACTTGTTATTATCTCCCACAATGGACCATTTTGGCTCATTGAAACCCATCATT AACAACACCACCAACATCCCATTAGCTCCAAAGCCTTCTTACCTTCACCTCCAAAACTACTACCCTAGCTTCTCCACAATGGGAGATCATCACCATCACC ATGAAGCTAGTGCAAAGTCCACACTTGACCTCTCCTCCATTCTCCTCAACATGGCATCTTCTTCGTCGATACTTCTTGGCGATTTCAAGCAACAAGGAGG TGGAGGAGGTGGGGGTGATCATGAGAGTGTGAGTAGTGTGGATCAATTTAGTAGCGGGTCTCAGCAAAGCAACGGCAATGGCGGTGGTGGTGGATTAATC TCTCCATTGATGAATCTCGTAGATCATCAGAACGAGCCGACTATGATGATGAAGGGCTCGAGTTTCGCGAACATCGACGCCATCCCTTTCAACTGCTTGG GTGATGGTGCTGGTGCTTGGAAGCAGAACTTGTTGCTTTGGGATAATTATGCCAACTCTTCATCACCATGTCCTAGTAGTGACCAAGTCCCTAGCACTTT CTCCACAACTAAGTGCTACACTTAG
AA sequence Show only first row Show all	>Lus10037178 pacid=23152340 polypeptide=Lus10037178 locus=Lus10037178.g ID=Lus10037178.BGIv1.0 annot-version=v1.0 MDSTERNSGSSCSNTNNNSMVEVVDKMEQQEVMLPGFRFHPTDEELVGFYLKRKIHQRPLSIELIKQLDIYKFDPWDLPKMATTGEKEWYFFCPRDRKYR NSARPNRVTGAGFWKATGTDRPIYSSEGNKCIGLKKSLVFYKGRAAKGFKTDWMMHEFRLPSLSDHHHAPAPAAAPSKRFLDKTIPANDAWAICRIFKKT NSTAQRTLSQSWVSPMVQEVVHPTTFTSEGDDHFTMNSSSITIPPTPPIHYFNYNNNNNITIDHQTHNQYSSPSYSYNQYTNNLLLSPTMDHFGSLKPII NNTTNIPLAPKPSYLHLQNYYPSFSTMGDHHHHHEASAKSTLDLSSILLNMASSSSILLGDFKQQGGGGGGGDHESVSSVDQFSSGSQQSNGNGGGGGLI SPLMNLVDHQNEPTMMMKGSSFANIDAIPFNCLGDGAGAWKQNLLLWDNYANSSSPCPSSDQVPSTFSTTKCYT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39820	NAC	ANAC094	NAC domain containing protein ...		Lus10037178 [exp]	0	1
AT1G26870	NAC	FEZ, ANAC009	FEZ, Arabidopsis NAC domain co...		Lus10036749 [exp]	1.0	0.9453
AT1G44970			Peroxidase superfamily protein...		Lus10010634 [exp]	4.6	0.9276
AT2G12646			PLATZ transcription factor fam...		Lus10008814 [exp]	4.7	0.9428
AT2G45750			S-adenosyl-L-methionine-depend...		Lus10005764 [exp]	5.1	0.9053
AT2G12646			PLATZ transcription factor fam...		Lus10039989 [exp]	5.5	0.9310
AT3G55230			Disease resistance-responsive ...		Lus10003301 [exp]	5.5	0.9384
AT4G14640		CAM8, AtCML8	calmodulin-like 8, calmodulin ...		Lus10004088 [exp]	5.7	0.9143
AT3G20840	AP2_ERF	PLT1	PLETHORA 1, Integrase-type DNA...		Lus10031831 [exp]	6.5	0.9283
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10025068 [exp]	7.2	0.9350
AT4G01240			S-adenosyl-L-methionine-depend...		Lus10035135 [exp]	10.6	0.9171

Compare expression of checked genes

Lus10037178 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.