Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14270 345 / 2e-120 CAAX amino terminal protease family protein (.1.2.3.4) AT5G60750 76 / 2e-15 CAAX amino terminal protease family protein (.1) AT2G20725 71 / 8e-14 CAAX amino terminal protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036748 [exp] 522 / 0 AT1G14270 400 / 6e-140 CAAX amino terminal protease family protein (.1.2.3.4) Lus10039818 [exp] 86 / 2e-19 AT2G20725 210 / 5e-68 CAAX amino terminal protease family protein (.1) Lus10018585 [exp] 83 / 5e-18 AT2G20725 235 / 3e-76 CAAX amino terminal protease family protein (.1) Lus10028751 [exp] 83 / 9e-18 AT5G60750 429 / 4e-151 CAAX amino terminal protease family protein (.1) Lus10024708 [exp] 82 / 3e-17 AT5G60750 444 / 2e-155 CAAX amino terminal protease family protein (.1) Lus10017536 [exp] 81 / 3e-17 AT5G60750 422 / 2e-148 CAAX amino terminal protease family protein (.1) Lus10032326 [exp] 69 / 6e-13 AT5G60750 402 / 1e-139 CAAX amino terminal protease family protein (.1) Lus10014639 [exp] 51 / 3e-08 ND 40 / 6e-05
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G147600 [exp] 371 / 3e-129 AT1G14270 362 / 1e-124 CAAX amino terminal protease family protein (.1.2.3.4) Potri.019G101100 [exp] 82 / 1e-17 AT2G20725 224 / 5e-72 CAAX amino terminal protease family protein (.1) Potri.003G133800 [exp] 79 / 2e-16 AT5G60750 461 / 6e-164 CAAX amino terminal protease family protein (.1) Potri.001G097500 [exp] 77 / 7e-16 AT5G60750 460 / 2e-163 CAAX amino terminal protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0472 [flax] [poplar] Peptidase_U PF02517 [flax] [poplar] CPBP CPBP intramembrane metalloprotease
Representative CDS sequence Show only first row Show all	>Lus10037179 pacid=23152486 polypeptide=Lus10037179 locus=Lus10037179.g ID=Lus10037179.BGIv1.0 annot-version=v1.0 ATGGTTTCGGCAATCTTCGCTTCTCTAGCTCAGTCCTCTCTGCACAGTCTATCTGCCTCTCCCAATCCATCATTATCTTCACCCAGAAGTACCTCACTCG GTATTCCCAAGTTCCCTTCTTCCACGAGGCTGAATGGGATTGCTAATGGACGGTTACGGCCAATCTGCTTCTTCAATAATGGGAAACAGAAGCCCAACAC CAATCTCGAGCCTCAGGCAGGCAGTTTTGTGTTGACAGGGTTCGTGGAAGTGGAGACTTTGCCATTTTTAGGGATTAAATTCGAAGAGCTGAATTTGGAT CAGAAAGCTGAACTGCTGTTTCTGGATCAAAGTCTAACAACAGCAGTTGTACTTGGAGTACTCTATAGCATTACAAAGAGCTTTGGACCCCTTCCTGAAG ATATCTTTCGCTATGATATGAAGGAACCTTTCAACCTACAAAAAGGTTGGTTGTTGTGGGCTGGGATTGGTCTCGGTAGTGCTGTGCTTGCCATTGCTTT GACAGGATTCGTTGTCTCTAATTTTCATGGCGAGACTCAAGAACGAGATGCTGATGCTCTTGTTCGGCTTCTTCCACTAATCGGGTCTTCAGGCATCAGC ACTGGCCTACTGCTAGCAATCACAGGTGTCTTGGCGCCAATTTTGGAAGAGAATGTATTTCGCGGATTCTTCATGGTTGCTCTAACAAAGTGGGTTCCAA TCCCATTCGCGGTCGTGATTAGTGCAGCAGTGTTTGCTCTAGCACATCTAACTCCAGGACAGTTTCCCCAACTGTTTGTACTAGGAACTCTGCTTGGATT TTCGTATGCTCAAACGCGGAACCTTCTTACTCCGATCACCATTCATGCTTTCTGGAACTCTGGGGTGATCTTGATTCTCACTTTCCTTCAGCTCCAAGGA TATGACATCAAAGAACTGTTGCAAGCATCCCAATAA
AA sequence Show only first row Show all	>Lus10037179 pacid=23152486 polypeptide=Lus10037179 locus=Lus10037179.g ID=Lus10037179.BGIv1.0 annot-version=v1.0 MVSAIFASLAQSSLHSLSASPNPSLSSPRSTSLGIPKFPSSTRLNGIANGRLRPICFFNNGKQKPNTNLEPQAGSFVLTGFVEVETLPFLGIKFEELNLD QKAELLFLDQSLTTAVVLGVLYSITKSFGPLPEDIFRYDMKEPFNLQKGWLLWAGIGLGSAVLAIALTGFVVSNFHGETQERDADALVRLLPLIGSSGIS TGLLLAITGVLAPILEENVFRGFFMVALTKWVPIPFAVVISAAVFALAHLTPGQFPQLFVLGTLLGFSYAQTRNLLTPITIHAFWNSGVILILTFLQLQG YDIKELLQASQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14270			CAAX amino terminal protease f...		Lus10037179 [exp]	0	1
AT1G60600		ABC4	ABERRANT CHLOROPLAST DEVELOPME...		Lus10032658 [exp]	2.4	0.9224
AT1G13270		MAP1B, MAP1C	methionine aminopeptidase 1B (...		Lus10035045 [exp]	2.8	0.9219
AT2G17695			unknown protein		Lus10041839 [exp]	5.9	0.9119
AT4G20030			RNA-binding (RRM/RBD/RNP motif...		Lus10006936 [exp]	12.6	0.8809
AT5G30510		ARRPS1, RPS1	ribosomal protein S1 (.1)		Lus10017100 [exp]	16.9	0.9179
AT5G24060			Pentatricopeptide repeat (PPR)...		Lus10039291 [exp]	16.9	0.9142
AT3G07670			Rubisco methyltransferase fami...		Lus10016087 [exp]	17.0	0.8664
AT3G15690			Single hybrid motif superfamil...		Lus10023118 [exp]	17.7	0.8882
AT1G65260		VIPP1, PTAC4	VESICLE-INDUCING PROTEIN IN PL...		Lus10027068 [exp]	21.0	0.9103
AT2G39190		ATATH8	Protein kinase superfamily pro...		Lus10036522 [exp]	21.7	0.8764

Compare expression of checked genes

Lus10037179 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.