Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26850 1026 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT4G18030 870 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G10440 700 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G33170 682 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G00750 667 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G45750 656 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G43200 546 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G31850 490 / 2e-167 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT4G19120 486 / 9e-166 ERD3 early-responsive to dehydration 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT4G00740 462 / 2e-156 QUA3 QUASIMODO 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036747 [exp] 1219 / 0 AT1G26850 1042 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10012830 [exp] 1138 / 0 AT1G26850 1056 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10030479 [exp] 1135 / 0 AT1G26850 1057 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10039385 [exp] 940 / 0 AT1G26850 936 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10003014 [exp] 876 / 0 AT4G18030 963 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10011045 [exp] 873 / 0 AT4G18030 963 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10008619 [exp] 719 / 0 AT1G26850 727 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10042197 [exp] 711 / 0 AT1G26850 706 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10006626 [exp] 700 / 0 AT1G26850 702 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G147800 [exp] 1061 / 0 AT1G26850 1040 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.010G094100 [exp] 1045 / 0 AT1G26850 1031 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.012G069000 [exp] 950 / 0 AT1G26850 980 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.003G087600 [exp] 915 / 0 AT4G18030 989 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G146400 [exp] 915 / 0 AT4G18030 1008 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.011G147600 [exp] 704 / 0 AT1G33170 984 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G454300 [exp] 702 / 0 AT1G33170 961 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.012G137300 [exp] 686 / 0 AT4G00750 874 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.015G139000 [exp] 676 / 0 AT2G45750 880 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.014G075700 [exp] 670 / 0 AT4G00750 955 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03141 [flax] [poplar] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10037180 pacid=23152427 polypeptide=Lus10037180 locus=Lus10037180.g ID=Lus10037180.BGIv1.0 annot-version=v1.0 ATGGCGATGAAAAACAATCCAGGTGATAATAGAACTAGGAGTTCTATACAGATATTTATTGTAGCAGGGCTTTGCTGTTTCTTCTACATACTGGGAGCAT GGCAGAAGAGTGGGTTTGGGAAAGCGGACAATCTCGCCATGGAAATCACTAAGAACACCGGAGATTGCAACATCATTTCAAGCCTGAATTTCGAGACTCA CCATGGCGGTGAAGTCGAGTCCAGCAACGATTCGAAGAAGAAAGTATTTGAGCCTTGCAAACCTCGGTACACCGATTATACGCCTTGCCAGGATCAGAAG CATGCCATGACCTTCCCTAGGGAGAACATGATATATAGGGAGAGGCATTGTCCCCCTGAGGAACAGAAGCTGCATTGTCTTATCCCGGCTCCCAAGGGCT ACGTTACTCCATTTCGCTGGCCTAAGAGTCGCGATTATGTCCCTTACGCAAATGCCCCGTATAAGAGCTTGACTGTTGAGAAGGCTATTCAGAATTGGGT TCAGTATGAGGGTAACGTGTTTAGATTTCCTGGTGGTGGAACTCAGTTCCCACAAGGTGCTGATAAGTACATCGATCAGTTGGCTTCAGTTATACCAATT AAGAACGGGACAGTCAGAACTGCGCTGGATACTGGTTGTGGGGTTGCCAGTTTGGGTGCATATCTATGGAGCAGAAATGTTATTGCCATGTCATTTGCTC CTAGAGACTCGCACGAAGCACAAGTTCAATTCGCTCTTGAAAGAGGTGTACCTGCTGTGATCGGCGTTCTTGGTACAATCAAGTTGCCATATCCATCCAG AGCTTTTGACATGGCTCATTGTTCTCGCTGTTTGATTCCATGGGGTGCTAATGATGGAAAATACCTCATGGAAGTTGACCGTGTGCTTAGACCGGGTGGT TACTGGGTTCTTTCTGGCCCTCCTATTAACTGGAAGGTTAACTACAAGGCATGGCAGCGCCCTAAAGAAGAACTCGAGGAGGAACAGAGAAAGATCGAAG AGACTGCAAAATTGCTTTGCTGGTCCAAGAAGTATGAAAAGGGCGAAATCGCTATCTTTCAGAAGAGAATGAATGGTGATTCATGCCATAGTAGACAAGA CAATTCTCAAGTTACCTATTGCAAGGATGCCAATCCTGATGATGTGTGGTACCAGAAAATGGAGGCTTGTGTAACCCCTTATCCTGATGCTACCGGTTCC GAACTTGAGAATTTCCCTGAAAGACTTCATGCTGTTCCGCCAAGAATCGCCAGTGGTTCTGTTCCCGGAGTTTCTGTTGAGAAATACCTAGAAGACAGCA ACAAATGGAAAAAACATGTCAAAGCTTATAAAAGAATCAATAGACTTCTGGACTCTGGTAGGTATAGGAATATAATGGATATGAATGCTGGATTAGGAGG ATTTGCTGCTGCACTTCAGTCTCCAAAATTGTGGGTCATGAACGTTGCTCCCACTATAGCCGAGAAAAGTACTTTGGGTGTCATCTACGAGCGAGGGTTG ACCGGAATCTATCATGACTGGTGTGAAGCTTTCTCTACCTATCCAAGGTCATATGACTTGATTCATGCCAATGGTCTCTTCAGTTTGTACAACAAGAAGT GTAATCTGGAGGACATCCTTCTAGAGATGGACAGAATACTGCGACCGGAAGGTGCAGTTATAATCCGCGACGAAGTTGATGTACTGATCAAGGTGAAGAA GATAACCGGAGGAATGAGATGGGATACCAAAATGATGGACCACGAAGATGGTCCTCTTATCCCCGAGAAAATACTTGTCGCGGTCAAGCAGTACTGGGTC GGTAATTCCACATCCAGCCAGTGA
AA sequence Show only first row Show all	>Lus10037180 pacid=23152427 polypeptide=Lus10037180 locus=Lus10037180.g ID=Lus10037180.BGIv1.0 annot-version=v1.0 MAMKNNPGDNRTRSSIQIFIVAGLCCFFYILGAWQKSGFGKADNLAMEITKNTGDCNIISSLNFETHHGGEVESSNDSKKKVFEPCKPRYTDYTPCQDQK HAMTFPRENMIYRERHCPPEEQKLHCLIPAPKGYVTPFRWPKSRDYVPYANAPYKSLTVEKAIQNWVQYEGNVFRFPGGGTQFPQGADKYIDQLASVIPI KNGTVRTALDTGCGVASLGAYLWSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWGANDGKYLMEVDRVLRPGG YWVLSGPPINWKVNYKAWQRPKEELEEEQRKIEETAKLLCWSKKYEKGEIAIFQKRMNGDSCHSRQDNSQVTYCKDANPDDVWYQKMEACVTPYPDATGS ELENFPERLHAVPPRIASGSVPGVSVEKYLEDSNKWKKHVKAYKRINRLLDSGRYRNIMDMNAGLGGFAAALQSPKLWVMNVAPTIAEKSTLGVIYERGL TGIYHDWCEAFSTYPRSYDLIHANGLFSLYNKKCNLEDILLEMDRILRPEGAVIIRDEVDVLIKVKKITGGMRWDTKMMDHEDGPLIPEKILVAVKQYWV GNSTSSQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26850			S-adenosyl-L-methionine-depend...		Lus10037180 [exp]	0	1
AT1G24764		ATMAP70-2	microtubule-associated protein...		Lus10030758 [exp]	2.2	0.9066
AT1G24764		ATMAP70-2	microtubule-associated protein...		Lus10013238 [exp]	3.2	0.8994
AT1G62950			leucine-rich repeat transmembr...		Lus10007019 [exp]	3.7	0.8649
AT2G27060			Leucine-rich repeat protein ki...		Lus10026756 [exp]	3.9	0.8837
AT2G28660			Chloroplast-targeted copper ch...		Lus10005875 [exp]	6.6	0.8766
AT2G40620	bZIP	AtbZIP18	Basic-leucine zipper (bZIP) tr...		Lus10042211 [exp]	6.9	0.8650
AT5G40610			NAD-dependent glycerol-3-phosp...		Lus10022308 [exp]	10.0	0.8388
AT1G62981			Protein of unknown function (D...		Lus10024481 [exp]	10.4	0.8624
AT1G76160		SKS5	SKU5 similar 5 (.1)		Lus10034560 [exp]	13.3	0.8354
AT3G01810			unknown protein		Lus10041590 [exp]	14.0	0.8491

Compare expression of checked genes

Lus10037180 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.