Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14280 139 / 1e-36 PKS2 phytochrome kinase substrate 2 (.1) AT2G02950 134 / 8e-35 PKS1 phytochrome kinase substrate 1 (.1) AT1G18810 74 / 4e-14 phytochrome kinase substrate-related (.1) AT5G04190 56 / 2e-08 PKS4 phytochrome kinase substrate 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036746 [exp] 706 / 0 AT2G02950 136 / 1e-35 phytochrome kinase substrate 1 (.1) Lus10030480 [exp] 300 / 7e-99 AT2G02950 120 / 4e-30 phytochrome kinase substrate 1 (.1) Lus10012831 [exp] 296 / 2e-97 AT1G14280 122 / 7e-31 phytochrome kinase substrate 2 (.1) Lus10024228 [exp] 77 / 5e-15 AT2G02950 107 / 2e-25 phytochrome kinase substrate 1 (.1) Lus10023598 [exp] 72 / 2e-13 AT2G02950 106 / 3e-25 phytochrome kinase substrate 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G062600 [exp] 129 / 5e-33 AT1G18810 100 / 5e-23 phytochrome kinase substrate-related (.1) Potri.005G090000 [exp] 45 / 5e-05 AT5G04190 75 / 3e-14 phytochrome kinase substrate 4 (.1) Potri.007G074056 [exp] 45 / 5e-05 AT5G04190 102 / 2e-23 phytochrome kinase substrate 4 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037181 pacid=23152563 polypeptide=Lus10037181 locus=Lus10037181.g ID=Lus10037181.BGIv1.0 annot-version=v1.0 ATGCCTGCTTTAGCATCATCATCTGGAATCAGCAGGAACCGCGATGGATCCTTCTCCTCGCACCTCGACAGCTCAGAGGAAGCAATCGTTCGCAGGCTCA CGGAGTCGAAAGTTGATGATGAAGTAGAAGGGGAGATTGGAGTTTTCAGCGCTGAGAAGTACTTCAATGGCCGTATCGATGATGACATCATCACTCCCCG GAGAGTAACCACCCTCTTGGGATCATCCAGGAGAAGGCAACAGCAATGCAAATCAAGAACTCCAAGTTTGAAGTCTGAGTCAAGCTGGAACAGCCGTAGT CAGTTCCTGAAAGGGTCATTCAGGAACAATTCCTGCCGCGGGAATTCCAGCAAGAAAGGCCTGCTTTATGGCCTTACGTGTCGGTGTTACTGCAGCGACA AGGATTCTGTTGATGTCAAGGAGGAAGCCATTGGAGAGATCAGTTTCAGGGGGGATCAAAATTCCGACAGGAATCTGATTTCAGGCAAGGCGAGTCCTGA AACAGCCTCTCGGGATTTGGATACCTTGAAGAAGAAGAAAGAAGTATGCTTCAGCTTTCCTACCACTCCTGGCACTGTCCTGTCAGGAATTCATGAACCA AACTCCATGTTGACCCAAAAATCGATTGATTTTTTTGGGTTTCCGGTCAACTTGAAGGGTAAGGAACCTGACAATGAGAGCGATGGAAGTTCAGATTTGT TTGAGATTGAGAGCGTGACAGGGAGAGTGACTCCATTTCTTGCGAGCCAAGCTTCAGGCGTCCCCTCTGGATGCGTCACTCCACTTTATGCTCCGAGCGA AGCCAGCATAGATTGGAGTGTAGTAACTGCTAGCATAGCTGATTTCTCCGTAGTATCAGACCAAGAAAGGCTCGGTAGGGCACACAGCCCGAGAAAGGCT AGTACGGTCACGGAGAGGCCATGGAGGCGATCTGGCAGCTTTTTGGGATGCAAGACTGGTGAATCTATTAGAGTTGCAAATGATGCTACAACGAACCGAG CCAAAGAGTACGAGCCAAAACCTGAGGTGGGAACTCCAAAATTGAGAAATTCTGATTCTTTCCCCCGGCCTACGGTTAGGGTCCAAGCTCATAGAAAACT GACAGGATTGGATGCCAGGTACAATCAGCATCATCTTGTTTCAAACCTGTCACGTCCTCATTTGTTCTCACCGCCTGATAGGCATCTTTCGAAGATTAGC ATCCTCGATCTCCATCGATGA
AA sequence Show only first row Show all	>Lus10037181 pacid=23152563 polypeptide=Lus10037181 locus=Lus10037181.g ID=Lus10037181.BGIv1.0 annot-version=v1.0 MPALASSSGISRNRDGSFSSHLDSSEEAIVRRLTESKVDDEVEGEIGVFSAEKYFNGRIDDDIITPRRVTTLLGSSRRRQQQCKSRTPSLKSESSWNSRS QFLKGSFRNNSCRGNSSKKGLLYGLTCRCYCSDKDSVDVKEEAIGEISFRGDQNSDRNLISGKASPETASRDLDTLKKKKEVCFSFPTTPGTVLSGIHEP NSMLTQKSIDFFGFPVNLKGKEPDNESDGSSDLFEIESVTGRVTPFLASQASGVPSGCVTPLYAPSEASIDWSVVTASIADFSVVSDQERLGRAHSPRKA STVTERPWRRSGSFLGCKTGESIRVANDATTNRAKEYEPKPEVGTPKLRNSDSFPRPTVRVQAHRKLTGLDARYNQHHLVSNLSRPHLFSPPDRHLSKIS ILDLHR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14280		PKS2	phytochrome kinase substrate 2...		Lus10037181 [exp]	0	1
AT5G52250		EFO1, RUP1	REPRESSOR OF UV-B PHOTOMORPHOG...		Lus10005742 [exp]	3.0	0.8616
AT2G02950		PKS1	phytochrome kinase substrate 1...		Lus10036746 [exp]	4.2	0.8322
AT3G57910			D111/G-patch domain-containing...		Lus10021033 [exp]	8.7	0.8179
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10012570 [exp]	8.9	0.8172
AT1G25440	CO	COL16	B-box type zinc finger protein...		Lus10034322 [exp]	11.2	0.8104
AT2G28085			SAUR-like auxin-responsive pro...		Lus10021436 [exp]	13.6	0.7945
					Lus10040269 [exp]	14.2	0.7887
AT1G21400			Thiamin diphosphate-binding fo...		Lus10000772 [exp]	17.0	0.7861
AT1G52240		PIRF1, ATROPGEF...	phytochrome interacting RopGEF...		Lus10011443 [exp]	19.7	0.7686
AT4G25480	AP2_ERF	CBF3, DREB1A, A...	C-REPEAT BINDING FACTOR 3, de...		Lus10024491 [exp]	20.2	0.7673

Compare expression of checked genes

Lus10037181 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.