Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17070 305 / 4e-104 peptidyl-prolyl cis-trans isomerases (.1) AT1G01940 42 / 0.0001 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G67530 42 / 0.0002 ATPUB49 plant U-box 49 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036745 [exp] 415 / 3e-149 AT4G17070 298 / 6e-102 peptidyl-prolyl cis-trans isomerases (.1) Lus10009237 [exp] 45 / 2e-05 AT1G01940 317 / 2e-112 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G150300 [exp] 350 / 2e-121 AT4G17070 475 / 1e-169 peptidyl-prolyl cis-trans isomerases (.1) Potri.003G083900 [exp] 340 / 4e-118 AT4G17070 484 / 3e-173 peptidyl-prolyl cis-trans isomerases (.1) Potri.014G051300 [exp] 308 / 5e-105 AT4G17070 436 / 4e-154 peptidyl-prolyl cis-trans isomerases (.1) Potri.002G139600 [exp] 288 / 9e-98 AT4G17070 405 / 3e-142 peptidyl-prolyl cis-trans isomerases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0475 [flax] [poplar] Cyclophil-like PF00160 [flax] [poplar] Pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Representative CDS sequence Show only first row Show all	>Lus10037182 pacid=23152288 polypeptide=Lus10037182 locus=Lus10037182.g ID=Lus10037182.BGIv1.0 annot-version=v1.0 ATGGGTCGCCGTCAAACCGATCCGGAACCGACCCGTTTCCCTTCCCTCATCATCCTCTCCGCAGGGTTCATCTCATTCGCCGCCGTCTACACTCTAGTCT CCGTCTTCTTCTACCCCTATAATCCCTGTTGGTTGAAGAAGCAAAAGGATGTATTGGCTCCTGACAGACAAGAATCTGGGGAGACTACAATGTGGACTTC TGGGATCATATTCGAGAGAGGAGAGGGAGTTGTCGGCTTGGAGACTGAATATGGCACCCTTCACATTCAACTCTTTCCGGACTGTGCACCGAATTCGGTA GCATACATCCTCGAGTTGCTGACCTTGCGACACTGTGCCGGCTGCCAGTTTTACCGAGCAGAAGGCAGAGGAGATTCATGGGATTCACAAGGGAATCACA TTGCTAATGCTGCGTTTGGGCCTCCGTTCGCATTGATTCAAGGAGTACTTGAAGCGCAAGGAACACCGTTCCGGAATGTCGAGAAGGAAGCTTGTCCAAT TGTGAGAAGGGGATCGGTTGCGTGGGTCGGTTCCGGGCCGGAATTCTTCATCAGCCTTGCTGACCATTCAGAATGGAAGCATGAATACACGGTCTTCGGA TCTGTGCTTCCGGAAGATATGGACATTGCCGAGAAGATCGTGAAACTCCCCACCAAGCCGGACGTGTGGAACAATATCAATGTGACGGTGCTCGAGAAGC CGGTGCCATTGATGTTCAGGAGAAGCAACAAAATAAGGCACCAGCAGCTGGGAGCCCATTAG
AA sequence Show only first row Show all	>Lus10037182 pacid=23152288 polypeptide=Lus10037182 locus=Lus10037182.g ID=Lus10037182.BGIv1.0 annot-version=v1.0 MGRRQTDPEPTRFPSLIILSAGFISFAAVYTLVSVFFYPYNPCWLKKQKDVLAPDRQESGETTMWTSGIIFERGEGVVGLETEYGTLHIQLFPDCAPNSV AYILELLTLRHCAGCQFYRAEGRGDSWDSQGNHIANAAFGPPFALIQGVLEAQGTPFRNVEKEACPIVRRGSVAWVGSGPEFFISLADHSEWKHEYTVFG SVLPEDMDIAEKIVKLPTKPDVWNNINVTVLEKPVPLMFRRSNKIRHQQLGAH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17070			peptidyl-prolyl cis-trans isom...		Lus10037182 [exp]	0	1
AT3G12160		AtRABA4d	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10021023 [exp]	2.4	0.9542
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10026736 [exp]	2.4	0.9353
AT1G11300			protein serine/threonine kinas...		Lus10018516 [exp]	5.5	0.9156
AT5G50090			unknown protein		Lus10004229 [exp]	6.0	0.8941
AT3G52870			IQ calmodulin-binding motif fa...		Lus10035595 [exp]	6.3	0.9414
AT4G25600			Oxoglutarate/iron-dependent ox...		Lus10014973 [exp]	7.7	0.9056
AT1G26940			Cyclophilin-like peptidyl-prol...		Lus10037197 [exp]	11.0	0.8628
AT5G59613			unknown protein		Lus10005899 [exp]	12.4	0.9230
AT1G09040			unknown protein		Lus10006519 [exp]	19.6	0.8801
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Lus10022336 [exp]	20.8	0.8773

Compare expression of checked genes

Lus10037182 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.