Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26840 350 / 7e-122 ORC6, ATORC6 ARABIDOPSIS THALIANA ORIGIN RECOGNITION COMPLEX PROTEIN 6, origin recognition complex protein 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036743 [exp] 525 / 0 AT1G26840 372 / 2e-130 ARABIDOPSIS THALIANA ORIGIN RECOGNITION COMPLEX PROTEIN 6, origin recognition complex protein 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G083700 [exp] 401 / 7e-142 AT1G26840 370 / 7e-130 ARABIDOPSIS THALIANA ORIGIN RECOGNITION COMPLEX PROTEIN 6, origin recognition complex protein 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05460 [flax] [poplar] ORC6 Origin recognition complex subunit 6 (ORC6)
Representative CDS sequence Show only first row Show all	>Lus10037184 pacid=23152420 polypeptide=Lus10037184 locus=Lus10037184.g ID=Lus10037184.BGIv1.0 annot-version=v1.0 ATGGACATCTCCGAGATCGCAAAACGGCTAGATCTGTCAGACTCCAAGCAACTGGTCCGGAAAGCCGCCGAGATTCGCCGCCTCTGCGACGTCCAGTTTG ACTCCTCCGTCATCGGAGTGGGAGAGGTTTGTAAAGCTGTGATGTGCTTGGAGATTGCCGCCAGTAGGTTTCAGGTGATATTCGATCGAAAAATGGCGAT GAAGTTGAGTGGAATGTCGGAGAAGGCTTATACCAGATCGTTCAACTTGCTGCAGAATAGCATTGGCGTCAAGAATAAGCTGGATGTCCGAGCTTTGGCG ATTAAGTTCGGGTGCGTTCGAATCATTCCTTACGTGCAGAAGGGTTTATCACTGTACAAGGATCGTTTTTTAGCATCATTGCCGGTTTCGAGACGAGCCA GTGCTGACTTTACTAGGCCGGTCTTCACTGCCGTTGCGTTCTACCTATCAGCAAAGAAGCAGAAGCTCAAGATAGACAAAGATAAGTTGATCGAAGTCTG TGGCACATCTGAATCCGAATTCCTATCAGTTGCTAATTCGATGAAAGATATATGCTTTGATGTGTTTGGTGTCTTGAAGGAGAAGACAGATCCAAAGGAA GTGAAGGGAAACCGAGATTTGCTTGATGTATTACCTGAGAAAAGAACTGTGGAGGATGGCGGGTATTCATCCGATGATGGAGCACAGATTTCCAGTTACA AGAAGCGGAAAAGGAATGAGAAGCAAGGCTATGAGAAGTGGAAATCTACTGTGTTAGCATCCAATAAGAACGGCTCAAAAGAATCGTGCAAGAAAGCAAG GCAAACAAGCCTCAACATCTTTCTCAAAGAAGTTCCTCCTGAAAGCACCACCACCACCATCAATGAGCTTGAAGGTTAA
AA sequence Show only first row Show all	>Lus10037184 pacid=23152420 polypeptide=Lus10037184 locus=Lus10037184.g ID=Lus10037184.BGIv1.0 annot-version=v1.0 MDISEIAKRLDLSDSKQLVRKAAEIRRLCDVQFDSSVIGVGEVCKAVMCLEIAASRFQVIFDRKMAMKLSGMSEKAYTRSFNLLQNSIGVKNKLDVRALA IKFGCVRIIPYVQKGLSLYKDRFLASLPVSRRASADFTRPVFTAVAFYLSAKKQKLKIDKDKLIEVCGTSESEFLSVANSMKDICFDVFGVLKEKTDPKE VKGNRDLLDVLPEKRTVEDGGYSSDDGAQISSYKKRKRNEKQGYEKWKSTVLASNKNGSKESCKKARQTSLNIFLKEVPPESTTTTINELEG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26840		ORC6, ATORC6	ARABIDOPSIS THALIANA ORIGIN RE...		Lus10037184 [exp]	0	1
AT3G14740			RING/FYVE/PHD zinc finger supe...		Lus10038142 [exp]	2.2	0.9591
AT5G13060		ABAP1	ARMADILLO BTB protein 1 (.1)		Lus10022039 [exp]	4.9	0.9567
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10021153 [exp]	10.1	0.9458
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10040517 [exp]	12.2	0.9386
AT1G67630		EMB2814, POLA2	EMBRYO DEFECTIVE 2814, DNA pol...		Lus10036982 [exp]	13.0	0.9231
AT1G67320		EMB2813	EMBRYO DEFECTIVE 2813, DNA pri...		Lus10000602 [exp]	14.5	0.9268
AT3G20490			unknown protein		Lus10019628 [exp]	15.9	0.9305
AT4G30860		SDG4, ASHR3	ASH1-related 3, SET domain gro...		Lus10006888 [exp]	17.2	0.9262
AT5G19330		ARIA	ARM repeat protein interacting...		Lus10042583 [exp]	17.2	0.9304
AT5G44635		MCM6	MINICHROMOSOME MAINTENANCE 6, ...		Lus10036244 [exp]	17.2	0.9360

Compare expression of checked genes

Lus10037184 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.