Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14300 437 / 1e-153 ARM repeat superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036742 [exp] 598 / 0 AT1G14300 498 / 1e-178 ARM repeat superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G124050 [exp] 482 / 3e-171 AT1G14300 462 / 2e-164 ARM repeat superfamily protein (.1.2) Potri.019G092000 [exp] 472 / 2e-167 AT1G14300 449 / 2e-159 ARM repeat superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04064 [flax] [poplar] DUF384 Domain of unknown function (DUF384) PF04063 [flax] [poplar] DUF383 Domain of unknown function (DUF383)
Representative CDS sequence Show only first row Show all	>Lus10037185 pacid=23152431 polypeptide=Lus10037185 locus=Lus10037185.g ID=Lus10037185.BGIv1.0 annot-version=v1.0 ATGGGCTTCGTTCTAGGCCTCGGACCCAAATGTATCACTAGTATCATAAAGCTGCGTCGTTCAGTTCAGTTTGAGAATAGTCAATTACTTAGCAGCCAAC GACGTGTCGTTCAGGCTGGTAATATTATTGTCGTTGCTGAGATTTTGGGGTTTAGGGAAACTAGGCAGCTGAAGAACAAGCGAGCCACCAGCAGCAGCAG CAGCAGCAGCAGCAGCAGCCATGGCGACGGAGCTCGAAGAACTAATTGGGTGAAGAAGGCAGCCGTTGATATTGTTCGGGACTTAACTGGGTCTGAAGAT GGATTGATGTCCCTCTCCAGACATGCGAAAATAGTGCTTCCTTCACTGTCTCGGCTCTTAAGTGAGAAAAAGGAGGTTTCTGAGCCAGCAGCGGAAGCTC TCGTCAATCTCTCGCAGAACTCGAGTTTGGGTGGGAAGATGATCGATATGGAGATGATTAAAACAGCTATGGATCTATTGTATAAACCTGAATCTACCAT TACTCGATTACTGGTGATGCTCTTAGTGAACCTCACTCAGTTGGATGCCGGTATTTCGTCCCTGCTTCAGACCGTCGATGAGAAGATGCAAGGGTTGCAC GTAATGAAGCTTGTGAGATCGTTCTCCAGATCCTCAAATGACAATAAAGATGATCCATTTGACCATGTTGGTTCAATTCTTGTAAACATCTCACAGAAAG AAGCCGGGAGAAAAATGTTGATGGATCCGAAGCGAGGGCTTCTGAAGCAGGTTCTCAGACAGTTCGATTCAACTAGTCCACTGCGGAAGAAAGGGGTATT TGGAACGATTCATAACTGCTGTTTCGACGCAGAAAATCAACTCCAGCATTTGCTGTTGATGTCGGAGTTTCTCTGGCCTGCTCTGCTACTGCCTGTTGCT GGTAACAAGATATACAGCAAAGAGGACTTATCGAAAATGCCTCCTGAGCTTTCCAGTGTGCTCTCGATTGAACGTGAACCATGGGATGATCCTGACATTC GTGTACAAGCACTGGAGGCCATTTACTTTGTTATCATGCAGGAGACGGGTCTGAGAAGCTTTTGGTCTGTCAATGGACCGAGGATACTGCAGATAGGGTA TGAAGACGAGGCGGATCCTAGAGTGATAGAAGCGTACGAGCGAGCTGGCTCCTGGCTAGTGCAGCATTCCATGGGAGACGATCCGAGTGACAATCCAAAC TAG
AA sequence Show only first row Show all	>Lus10037185 pacid=23152431 polypeptide=Lus10037185 locus=Lus10037185.g ID=Lus10037185.BGIv1.0 annot-version=v1.0 MGFVLGLGPKCITSIIKLRRSVQFENSQLLSSQRRVVQAGNIIVVAEILGFRETRQLKNKRATSSSSSSSSSSHGDGARRTNWVKKAAVDIVRDLTGSED GLMSLSRHAKIVLPSLSRLLSEKKEVSEPAAEALVNLSQNSSLGGKMIDMEMIKTAMDLLYKPESTITRLLVMLLVNLTQLDAGISSLLQTVDEKMQGLH VMKLVRSFSRSSNDNKDDPFDHVGSILVNISQKEAGRKMLMDPKRGLLKQVLRQFDSTSPLRKKGVFGTIHNCCFDAENQLQHLLLMSEFLWPALLLPVA GNKIYSKEDLSKMPPELSSVLSIEREPWDDPDIRVQALEAIYFVIMQETGLRSFWSVNGPRILQIGYEDEADPRVIEAYERAGSWLVQHSMGDDPSDNPN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14300			ARM repeat superfamily protein...		Lus10037185 [exp]	0	1
AT3G09890			Ankyrin repeat family protein ...		Lus10014410 [exp]	2.2	0.8644
AT3G25060			Tetratricopeptide repeat (TPR)...		Lus10025915 [exp]	2.4	0.8426
AT5G19670			Exostosin family protein (.1)		Lus10011121 [exp]	5.7	0.8321
AT1G54730			Major facilitator superfamily ...		Lus10035354 [exp]	13.9	0.8398
AT2G09990			Ribosomal protein S5 domain 2-...		Lus10038012 [exp]	14.7	0.8125
AT3G46020			RNA-binding (RRM/RBD/RNP motif...		Lus10040854 [exp]	17.0	0.8374
AT5G53070			Ribosomal protein L9/RNase H1 ...		Lus10005909 [exp]	19.6	0.8363
AT5G51960			unknown protein		Lus10036504 [exp]	22.8	0.8184
AT1G29990		PFD6, PDF6	prefoldin 6 (.1)		Lus10023313 [exp]	23.5	0.8209
AT3G44010			Ribosomal protein S14p/S29e fa...		Lus10039155 [exp]	25.0	0.8006

Compare expression of checked genes

Lus10037185 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.