Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02910 542 / 0 Protein of unknown function (DUF616) (.1) AT1G34550 459 / 2e-153 EMB2756 EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1) AT4G09630 450 / 3e-150 Protein of unknown function (DUF616) (.1) AT1G53040 295 / 2e-92 Protein of unknown function (DUF616) (.1), Protein of unknown function (DUF616) (.2) AT1G28240 294 / 1e-91 Protein of unknown function (DUF616) (.1) AT5G42660 244 / 7e-74 Protein of unknown function (DUF616) (.1) AT4G38500 237 / 9e-71 Protein of unknown function (DUF616) (.1) AT5G46220 158 / 5e-42 Protein of unknown function (DUF616) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036741 [exp] 882 / 0 AT2G02910 545 / 0.0 Protein of unknown function (DUF616) (.1) Lus10009419 [exp] 464 / 3e-156 AT1G34550 753 / 0.0 EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1) Lus10028702 [exp] 461 / 6e-155 AT1G34550 750 / 0.0 EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1) Lus10011175 [exp] 291 / 2e-90 AT1G28240 730 / 0.0 Protein of unknown function (DUF616) (.1) Lus10001446 [exp] 290 / 7e-90 AT1G28240 706 / 0.0 Protein of unknown function (DUF616) (.1) Lus10015438 [exp] 275 / 2e-84 AT1G28240 698 / 0.0 Protein of unknown function (DUF616) (.1) Lus10024001 [exp] 250 / 2e-75 AT4G38500 771 / 0.0 Protein of unknown function (DUF616) (.1) Lus10025082 [exp] 249 / 2e-75 AT4G38500 764 / 0.0 Protein of unknown function (DUF616) (.1) Lus10016294 [exp] 234 / 4e-70 AT5G42660 603 / 0.0 Protein of unknown function (DUF616) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G094000 [exp] 561 / 0 AT2G02910 565 / 0.0 Protein of unknown function (DUF616) (.1) Potri.019G084100 [exp] 457 / 6e-153 AT1G34550 707 / 0.0 EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1) Potri.013G113700 [exp] 457 / 7e-153 AT1G34550 708 / 0.0 EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1) Potri.004G044100 [exp] 291 / 2e-90 AT1G28240 779 / 0.0 Protein of unknown function (DUF616) (.1) Potri.011G053000 [exp] 291 / 3e-90 AT1G28240 775 / 0.0 Protein of unknown function (DUF616) (.1) Potri.001G399800 [exp] 280 / 1e-86 AT1G53040 574 / 0.0 Protein of unknown function (DUF616) (.1), Protein of unknown function (DUF616) (.2) Potri.011G119300 [exp] 280 / 1e-86 AT1G53040 588 / 0.0 Protein of unknown function (DUF616) (.1), Protein of unknown function (DUF616) (.2) Potri.009G138000 [exp] 249 / 4e-75 AT4G38500 725 / 0.0 Protein of unknown function (DUF616) (.1) Potri.004G177600 [exp] 246 / 4e-74 AT4G38500 750 / 0.0 Protein of unknown function (DUF616) (.1) Potri.002G149900 [exp] 239 / 1e-71 AT5G42660 633 / 0.0 Protein of unknown function (DUF616) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04765 [flax] [poplar] DUF616 Protein of unknown function (DUF616)
Representative CDS sequence Show only first row Show all	>Lus10037186 pacid=23152294 polypeptide=Lus10037186 locus=Lus10037186.g ID=Lus10037186.BGIv1.0 annot-version=v1.0 ATGGCGGTTTACAAGGTGAACGTGGAGCTTCCGCCGGATAGGAGGAACAATTTGAACTCACCGGGCCGATTTGTCCGGAGAGGGAAGAGGATCGGCAGGG TTCTCCGGCGGGCCCTCTCTTTGGGTTGGATTTTTCTGCTATTTTGTCTCTTGTTGGTGGTTGTGCGGGTTTNNNNNNNNNNNNNNNNNNCGAGAGGGCG GACGATTTTGCACTCCCGGGTCCTTTTTGGCGGGAGGGGGAGGAGGATCGGCAGGTTTCTCCGGCAGCCTATCTATTGGGTTTGGATTTTGCTGCTATCT GCTCTCTGCTTGGTGTTCACCGGTCTTTTTGGGCTTAGATTTCTCTTCCCTGCTAATTCCGATATTCAAGCTGAACGGAAGGTGACGATGGAGATGGAGA TTTCCGTCGTACATGAAGAGCTCGGCGGGAACGCGTCTTCTTCCTCTATCGGCCGACGAAACTTCTCCGGCGCCGGTTACGTCGGGAAACCCAAGCACCG GAAGCAGCATCTTCCTTGTAAAGTTGAGTTTGCCAAATCTGTGGATTATATGATGGAACCGAATTCAGTGACGAATTTCACGCAGTTTTCGTTAGGATAT GTGAACAAGGAGGAAATGAATTCGAGTAGCTCAGGATTCGGAGGCCATCAGACCATGAAGCATAGGGAAGATTCATTTCATGCCATGAATCAAACGGTTC ATTGTGGATTTGTGAATGGAGGATCTTCCGACACTACTCCTGGTTTCGATCTGGACGAGAAGGACAAGGCATTCATGAGCAAATGTCAAGTTGCTGTTTC GTCTTGCATATTCGGCAGCTCTGATTTCCTGAGACGGCCTGCTAGCAGGAATATGAGTGAATTCTCCAAGGAGAATGTATGTTTTGTAATGTTTGTGGAT GATCAAACGCTTGAGAAACTATCTTCCGAGGGACATAAACCCGATGGTAGAGGATATGTTGGTCTGTGGAAGCTAGTAGTTGTTAACAACTTGCCGTATT CAGACATGAGGAGAACTGGAAAGGTGCCGAAATTTTTGTCGCATCGCCTCTTCCCTTCTTCTCGCTATTCGATTTGGGTCGACAGTAAGTTACGACTCGT GATTGATCCGATGCTTATCATTGAACGCTTTCTTTGGAGAACGAGATCAGAGTTTGCCATTTCGAAGCATTATGATCGTCAGTGTGTCTGGGAGGAGGTA CTCCAGAATAAGCGATTAAACAAGTATCGACATAGTGAGATCGATAGGCAGTTCTATTTTTACCGGTCAGATGGTCTCACTAAATTTGATCCTTCAGACC CGAATACTCCTCTCCCTAGTTATGTGCCTGAAGGTTCGTTTATCGTCCGAGCTCACACGCCAATGTCTAATTTATTTTCGTGCCTGTGGTTCAATGAGGT TGACCGATTTACTTCAAGAGATCAACTCAGCTTTGCATACACATACTTGAAACTCAGGAGATCCAATCCAGATAAACCCTTTTATCTCAAAATGTTTGAG GATTGTGAGCGAAGAACTCTAGCAAAGCTATTCCGGCATAGGGTGCTACGACCACCACCTACTATCGGTCACATTATACAACCTCTGTGCCCATCGGAAA TGGCATTAGGAAAGCTAGAGTTAGATCATTTGGCGGCCAGAGTTCAGAGCCAATATTGCATAGTTATCTGCCCCTTCAGCTTTCGGTGTGCATGGTCTTG TCTGCAGCCAAAGAAGCAATCTTTGCTTGAGTTTCGACAAACTAACCCGGAACAAGATTGTCCCCGCAAGCTGGAGACTGCGAACTTGCTGTGGAATTCT AACGAAGTTATTGTTCAAGGCAGCATAGGAGCTGGAACATCTCTCCATTGCACTTGCTAA
AA sequence Show only first row Show all	>Lus10037186 pacid=23152294 polypeptide=Lus10037186 locus=Lus10037186.g ID=Lus10037186.BGIv1.0 annot-version=v1.0 MAVYKVNVELPPDRRNNLNSPGRFVRRGKRIGRVLRRALSLGWIFLLFCLLLVVVRVXXXXXXXRGRTILHSRVLFGGRGRRIGRFLRQPIYWVWILLLS ALCLVFTGLFGLRFLFPANSDIQAERKVTMEMEISVVHEELGGNASSSSIGRRNFSGAGYVGKPKHRKQHLPCKVEFAKSVDYMMEPNSVTNFTQFSLGY VNKEEMNSSSSGFGGHQTMKHREDSFHAMNQTVHCGFVNGGSSDTTPGFDLDEKDKAFMSKCQVAVSSCIFGSSDFLRRPASRNMSEFSKENVCFVMFVD DQTLEKLSSEGHKPDGRGYVGLWKLVVVNNLPYSDMRRTGKVPKFLSHRLFPSSRYSIWVDSKLRLVIDPMLIIERFLWRTRSEFAISKHYDRQCVWEEV LQNKRLNKYRHSEIDRQFYFYRSDGLTKFDPSDPNTPLPSYVPEGSFIVRAHTPMSNLFSCLWFNEVDRFTSRDQLSFAYTYLKLRRSNPDKPFYLKMFE DCERRTLAKLFRHRVLRPPPTIGHIIQPLCPSEMALGKLELDHLAARVQSQYCIVICPFSFRCAWSCLQPKKQSLLEFRQTNPEQDCPRKLETANLLWNS NEVIVQGSIGAGTSLHCTC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02910			Protein of unknown function (D...		Lus10037186 [exp]	0	1
AT2G28880		ADCS, EMB1997	embryo defective 1997, aminode...		Lus10036525 [exp]	1.0	0.8265
AT2G05590			TLD-domain containing nucleola...		Lus10014476 [exp]	4.0	0.8104
AT2G38580			Mitochondrial ATP synthase D c...		Lus10025211 [exp]	5.3	0.7876
AT1G76270			O-fucosyltransferase family pr...		Lus10013234 [exp]	8.9	0.7462
AT4G13630			Protein of unknown function, D...		Lus10007129 [exp]	10.1	0.7808
AT3G03810		EDA30	embryo sac development arrest ...		Lus10010654 [exp]	12.2	0.7618
AT1G60890			Phosphatidylinositol-4-phospha...		Lus10020821 [exp]	21.4	0.7454
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Lus10008945 [exp]	21.7	0.7891
AT4G04320			malonyl-CoA decarboxylase fami...		Lus10020031 [exp]	21.8	0.7316
AT3G18000		XPL1, NMT1, XIP...	XIPOTL 1, N-METHYLTRANSFERASE ...		Lus10018010 [exp]	25.4	0.7475

Compare expression of checked genes

Lus10037186 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.