Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14310 283 / 1e-96 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT2G41250 158 / 5e-47 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT5G44730 44 / 4e-05 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036740 [exp] 429 / 5e-154 AT1G14310 343 / 2e-120 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10010452 [exp] 167 / 1e-50 AT2G41250 367 / 1e-128 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10039005 [exp] 163 / 4e-49 AT2G41250 384 / 4e-135 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10027299 [exp] 163 / 5e-49 AT2G41250 383 / 8e-135 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10015451 [exp] 49 / 9e-07 AT5G44730 417 / 1e-149 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G093900 [exp] 312 / 6e-108 AT1G14310 319 / 9e-111 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.006G040800 [exp] 152 / 9e-45 AT2G41250 362 / 8e-127 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.016G037600 [exp] 151 / 1e-44 AT2G41250 371 / 2e-130 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.003G154500 [exp] 40 / 0.0009 AT5G44730 422 / 3e-151 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF00702 [flax] [poplar] Hydrolase haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Lus10037187 pacid=23152626 polypeptide=Lus10037187 locus=Lus10037187.g ID=Lus10037187.BGIv1.0 annot-version=v1.0 ATGGAAGCTTGCTTGACGAAATGCTCCAACGGGATTACCCTTTCGAGATCTCTGAGAAAGCTTAGGAACCCAGTTCGTCGCTCTTCCATGCCGATCCACT CCGGAACCCAGTCGGCGGCGAAACCGTACGATGCATTACTGCTGGACGCCGGCGGAACGCTTCTGCAGTTGGCCAAACCCGTCGAGGAAATCTACGCTTC CATCGGCGCGAAATACGGATTAACTGCAACTCCAGCTGAGATAAAGCAAGGTTTCAGGAGGGCCTTTGCTGCTCCGTCTTGGCCCGATAAGATCCGTTAT CAGGGAGATGGGAGGCCGTTTTGGAAGCTGGTTGTTTCTGAAGCTACTGGTTCAGATAACCTTGACTACTTCGAAGAAGTCTATGAGTACTACGCAAATG GTGATGCTTGGAGGCTGCCGGTTGGGGCTCACAACACCATTTCTCTTCTCAGAGATGCTGGAGTGAAAGTCGCTGTTGTTTCGAATTTCGACACCCGGCT AAGGAAGCTGTTAAAGGACTTGGACATCTCGCATCTGTTCGACGCTGTGATTATCTCGTCTGAGGTAGGATACGAGAAGCCTGATCCGAAGATATTCCAT GCTGCTCTAGATGAAGTGAATGTGGAGCCTGGTAGAGCTGTGCACATTGGAGACGATCTCGAGGCAGATAAGGACGGAGCTAATGCCGTCGGGATAGACT GCTGGTTGTGGGGAACGGATGTCAAGACCTTTGCTGATATACAAACCTGCATCCTCACGGTGTAA
AA sequence Show only first row Show all	>Lus10037187 pacid=23152626 polypeptide=Lus10037187 locus=Lus10037187.g ID=Lus10037187.BGIv1.0 annot-version=v1.0 MEACLTKCSNGITLSRSLRKLRNPVRRSSMPIHSGTQSAAKPYDALLLDAGGTLLQLAKPVEEIYASIGAKYGLTATPAEIKQGFRRAFAAPSWPDKIRY QGDGRPFWKLVVSEATGSDNLDYFEEVYEYYANGDAWRLPVGAHNTISLLRDAGVKVAVVSNFDTRLRKLLKDLDISHLFDAVIISSEVGYEKPDPKIFH AALDEVNVEPGRAVHIGDDLEADKDGANAVGIDCWLWGTDVKTFADIQTCILTV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14310			Haloacid dehalogenase-like hyd...		Lus10037187 [exp]	0	1
AT1G52340		SIS4, SDR1, ISI...	SHORT-CHAIN DEHYDROGENASE REDU...		Lus10016354 [exp]	19.9	0.6902
AT1G11000		ATMLO4, MLO4	MILDEW RESISTANCE LOCUS O 4, S...		Lus10012698 [exp]	20.5	0.6495
AT4G30580		LPAT1, ATS2, EM...	lysophosphatidic acid acyltran...		Lus10036259 [exp]	37.4	0.6579
AT1G28100			unknown protein		Lus10001800 [exp]	38.8	0.6537
AT2G35130			Tetratricopeptide repeat (TPR)...		Lus10018318 [exp]	41.2	0.6441
					Lus10027092 [exp]	42.4	0.6196
					Lus10020868 [exp]	45.5	0.6417
AT3G12685			Acid phosphatase/vanadium-depe...		Lus10001841 [exp]	53.7	0.6415
AT2G17240			unknown protein		Lus10043214 [exp]	62.8	0.6339
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10038308 [exp]	63.5	0.6265

Compare expression of checked genes

Lus10037187 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.