Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58100 153 / 4e-42 TCP TCP8 TCP domain protein 8, TCP family transcription factor (.1.2) AT1G35560 149 / 6e-41 TCP TCP23 TCP family transcription factor (.1) AT1G69690 147 / 1e-40 TCP AtTCP15, TCP15 TEOSINTE BRANCHED1/CYCLOIDEA/PCF 15, TCP family transcription factor (.1) AT1G72010 145 / 3e-39 TCP TCP22 TCP family transcription factor (.1) AT3G47620 141 / 6e-37 TCP AtTCP14, TCP14 "TEOSINTE BRANCHED, cycloidea and PCF \(TCP\) 14", TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 (.1) AT5G23280 129 / 2e-34 TCP TCP7 TCP family transcription factor (.1) AT2G45680 130 / 5e-34 TCP TCP9 TCP family transcription factor (.1) AT5G51910 125 / 1e-32 TCP TCP19 TCP family transcription factor (.1.2) AT5G08330 122 / 4e-32 TCP AtTCP11, CHE, TCP21 TCP domain protein 11, TCP family transcription factor (.1) AT3G27010 123 / 1e-31 TCP ATTCP20, PCF1, AT-TCP20 ARABIDOPSIS THALIANA TEOSINTE BRANCHED 1, CYCLOIDEA, PCF \(TCP\)-DOMAIN FAMILY PROTEIN 20, TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008621 [exp] 124 / 2e-32 AT3G47620 140 / 4e-38 "TEOSINTE BRANCHED, cycloidea and PCF \(TCP\) 14", TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 (.1) Lus10032022 [exp] 124 / 6e-32 AT3G27010 234 / 2e-75 ARABIDOPSIS THALIANA TEOSINTE BRANCHED 1, CYCLOIDEA, PCF \(TCP\)-DOMAIN FAMILY PROTEIN 20, TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 (.1) Lus10015760 [exp] 120 / 4e-31 AT3G27010 181 / 1e-55 ARABIDOPSIS THALIANA TEOSINTE BRANCHED 1, CYCLOIDEA, PCF \(TCP\)-DOMAIN FAMILY PROTEIN 20, TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 (.1) Lus10010177 [exp] 120 / 1e-30 AT5G23280 186 / 1e-57 TCP family transcription factor (.1) Lus10037046 [exp] 112 / 4e-30 AT3G27010 145 / 5e-44 ARABIDOPSIS THALIANA TEOSINTE BRANCHED 1, CYCLOIDEA, PCF \(TCP\)-DOMAIN FAMILY PROTEIN 20, TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 (.1) Lus10008444 [exp] 101 / 6e-26 AT1G58100 104 / 5e-28 TCP domain protein 8, TCP family transcription factor (.1.2) Lus10013814 [exp] 101 / 1e-24 AT3G47620 119 / 2e-32 "TEOSINTE BRANCHED, cycloidea and PCF \(TCP\) 14", TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 (.1) Lus10035193 [exp] 93 / 1e-21 AT3G27010 156 / 6e-47 ARABIDOPSIS THALIANA TEOSINTE BRANCHED 1, CYCLOIDEA, PCF \(TCP\)-DOMAIN FAMILY PROTEIN 20, TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 (.1) Lus10041328 [exp] 82 / 1e-17 AT3G47620 93 / 3e-22 "TEOSINTE BRANCHED, cycloidea and PCF \(TCP\) 14", TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G110700 [exp] 155 / 1e-42 AT1G35560 224 / 9e-70 TCP family transcription factor (.1) Potri.019G081800 [exp] 153 / 7e-42 AT1G72010 220 / 5e-68 TCP family transcription factor (.1) Potri.004G222100 [exp] 153 / 1e-40 AT1G58100 172 / 4e-48 TCP domain protein 8, TCP family transcription factor (.1.2) Potri.011G055500 [exp] 144 / 1e-38 AT3G47620 173 / 2e-49 "TEOSINTE BRANCHED, cycloidea and PCF \(TCP\) 14", TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 (.1) Potri.004G046300 [exp] 142 / 5e-38 AT3G47620 182 / 2e-52 "TEOSINTE BRANCHED, cycloidea and PCF \(TCP\) 14", TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 (.1) Potri.014G078500 [exp] 130 / 2e-34 AT2G45680 257 / 1e-83 TCP family transcription factor (.1) Potri.007G074028 [exp] 129 / 3e-34 AT5G23280 196 / 3e-62 TCP family transcription factor (.1) Potri.005G090300 [exp] 129 / 3e-34 AT5G23280 169 / 9e-52 TCP family transcription factor (.1) Potri.015G138200 [exp] 127 / 9e-33 AT5G51910 230 / 1e-73 TCP family transcription factor (.1.2) Potri.002G152200 [exp] 127 / 9e-33 AT2G45680 286 / 6e-95 TCP family transcription factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03634 [flax] [poplar] TCP TCP family transcription factor
Representative CDS sequence Show only first row Show all	>Lus10037190 pacid=23152485 polypeptide=Lus10037190 locus=Lus10037190.g ID=Lus10037190.BGIv1.0 annot-version=v1.0 ATGGAGCCAGAAAATGGAATCCGTAGGCAAATCATCAATTTCCCTCTCCAACTCCTTGAAAAAAACACCACTTCCAATTCTCATCATCATCATCATAACC CTAACAATAATAACACCAACAAACCCACTAATTCTTCCCAATTCTTCCAACTCCACCACCAACCGCCACCGTCCTCCTCCGCCTCCGCCGCCGCCGCAGT TGACAGTACCTCACCTCATGACCAGGCAATCACAGTCGTCACACCCACCACCACCACCACAAAGAAGCCGCCGCCGAAGCGGACGTCCACCAAGGACCGC CACACCAAGGTCGAAGGCCGCGGCCGGCGGATCCGTATGCCGGCCACCTGCGCTGCCAGGGTGTTCCAGCTGACTCGGGAGCTCGGCCACAAATCCGACG GCGAGACCATCGAGTGGCTCCTACAGCAGGCTGAGCCAGCTGTCATCGCCGCCACTGGTACTGGTACCATCCCTGCTAACTTCACTTCTCTTAACATCTC CCTACGTAGCTCCGGATCCACCGTCTCCGCCTCCCACCACCGGCATACTTCCTCCTACTTCGCTGCTGCCGCCGCTGCTGCGGCAGGCGGAATCCCTTCC TTCGCGAATTCGCTTGGGTTCAGCTCCAACGACGTCACTGCTCCTCTCTTCCTCCACGGCGTCCCTACTAAACAGGAATTCCACGGCGGTGGCGGAGGAG GAGGAAGCAGCAGGGAAGAGGATCGGTCATCGCCGCCGGAAAAAAGCAACGACGAAAGAAAAGACCAAGATCGGGATCGGGAGCAGGACTTGTTCGCATC CCACCAGCAACACCACCATCACCAGATGATGATGGCGGCCGCTGCGGCAGGGAGCTTCAACTACTTGCTGCAGTCAAGCAGCGCCGGTGTCATCCCGGCG AGTCACGGCGGCGGAAGTAGTAGTAGCACGACGGTTCCCGCTACGTTCTGGATGATGGGTGGGTCGGGCGACCCGCCCTCCACGTACCCATCTTCCTCCT TCATCGGCGGAGGCGTTCATCATCATGTTAATGCCGCCAGTAGTATGTACAGAGGGCTGCATTTAATGAACTTCGCCGGCGGAGGCGGAGGCGGACAACA TCTAGGATCATCAACGTTCGTCGGCGGGGGAGGAGTTGATAACAGTCATTTAGGTGTATTGGCGACGCTGAACGCGGCGTACCGGCCGATGATGATGGGC GGAGGAGGTGGGTCCGGTAACTCATTGTCGGGAGGAGCGAGTACTGATTCGAGTCGAAACCATGGAGGCGACGGAGGAGAAGAGCGGGATGATAATACAG GCAGCTAA
AA sequence Show only first row Show all	>Lus10037190 pacid=23152485 polypeptide=Lus10037190 locus=Lus10037190.g ID=Lus10037190.BGIv1.0 annot-version=v1.0 MEPENGIRRQIINFPLQLLEKNTTSNSHHHHHNPNNNNTNKPTNSSQFFQLHHQPPPSSSASAAAAVDSTSPHDQAITVVTPTTTTTKKPPPKRTSTKDR HTKVEGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSTVSASHHRHTSSYFAAAAAAAAGGIPS FANSLGFSSNDVTAPLFLHGVPTKQEFHGGGGGGGSSREEDRSSPPEKSNDERKDQDRDREQDLFASHQQHHHHQMMMAAAAAGSFNYLLQSSSAGVIPA SHGGGSSSSTTVPATFWMMGGSGDPPSTYPSSSFIGGGVHHHVNAASSMYRGLHLMNFAGGGGGGQHLGSSTFVGGGGVDNSHLGVLATLNAAYRPMMMG GGGGSGNSLSGGASTDSSRNHGGDGGEERDDNTGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69690	TCP	AtTCP15, TCP15	TEOSINTE BRANCHED1/CYCLOIDEA/P...		Lus10037190 [exp]	0	1
AT2G01940	C2H2ZnF	SGR5, ATIDD15	SHOOT GRAVITROPISM 5, ARABIDOP...		Lus10031882 [exp]	2.0	0.8372
AT1G70280			NHL domain-containing protein ...		Lus10039484 [exp]	4.7	0.8028
AT4G28760			Protein of unknown function (D...		Lus10011911 [exp]	5.3	0.7854
AT3G27750		EMB3123	EMBRYO DEFECTIVE 3123, unknown...		Lus10025805 [exp]	6.9	0.7944
AT3G26935			DHHC-type zinc finger family p...		Lus10032009 [exp]	9.4	0.7739
AT2G32990		ATGH9B8	glycosyl hydrolase 9B8 (.1)		Lus10035316 [exp]	9.8	0.7678
AT5G55960			unknown protein		Lus10016650 [exp]	12.2	0.7698
AT2G38090	MYB	MYB-R	Duplicated homeodomain-like su...		Lus10027781 [exp]	12.4	0.7850
AT1G64390		ATGH9C2	glycosyl hydrolase 9C2 (.1)		Lus10033957 [exp]	13.6	0.7817
AT3G26935			DHHC-type zinc finger family p...		Lus10035177 [exp]	15.2	0.7782

Compare expression of checked genes

Lus10037190 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.