Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74520 198 / 3e-65 ATHVA22A HVA22 homologue A (.1) AT1G69700 198 / 4e-65 ATHVA22C HVA22 homologue C (.1) AT5G62490 148 / 1e-45 ATHVA22B ARABIDOPSIS THALIANA HVA22 HOMOLOGUE B, HVA22 homologue B (.1) AT2G42820 113 / 7e-32 HVA22F HVA22-like protein F (.1) AT5G50720 86 / 6e-22 ATHVA22E ARABIDOPSIS THALIANA HVA22 HOMOLOGUE E, HVA22 homologue E (.1) AT4G24960 81 / 1e-19 ATHVA22D ARABIDOPSIS THALIANA HVA22 HOMOLOGUE D, HVA22 homologue D (.1.2.3) AT4G36720 53 / 1e-08 HVA22K HVA22-like protein K (.1) AT1G75700 46 / 3e-06 HVA22G HVA22-like protein G (.1) AT5G42560 45 / 2e-05 Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.1), Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.2), Abscisic acid-responsive (TB2/DP1, HVA22) family protein (.3) AT1G19950 43 / 4e-05 HVA22H HVA22-like protein H (ATHVA22H) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008623 [exp] 205 / 6e-68 AT1G74520 234 / 5e-80 HVA22 homologue A (.1) Lus10023605 [exp] 199 / 5e-65 AT1G74520 246 / 7e-84 HVA22 homologue A (.1) Lus10042193 [exp] 208 / 2e-63 AT5G39850 327 / 2e-108 Ribosomal protein S4 (.1) Lus10024234 [exp] 195 / 2e-63 AT1G74520 244 / 5e-83 HVA22 homologue A (.1) Lus10031386 [exp] 105 / 9e-29 AT2G42820 246 / 4e-85 HVA22-like protein F (.1) Lus10010944 [exp] 104 / 2e-28 AT2G42820 246 / 7e-85 HVA22-like protein F (.1) Lus10043186 [exp] 88 / 4e-22 AT5G50720 169 / 1e-55 ARABIDOPSIS THALIANA HVA22 HOMOLOGUE E, HVA22 homologue E (.1) Lus10032557 [exp] 87 / 5e-22 AT5G50720 172 / 8e-57 ARABIDOPSIS THALIANA HVA22 HOMOLOGUE E, HVA22 homologue E (.1) Lus10010093 [exp] 45 / 5e-06 AT4G36720 202 / 2e-66 HVA22-like protein K (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G069300 [exp] 214 / 1e-71 AT1G74520 259 / 1e-89 HVA22 homologue A (.1) Potri.015G062800 [exp] 211 / 2e-70 AT1G74520 255 / 4e-88 HVA22 homologue A (.1) Potri.001G006000 [exp] 109 / 2e-30 AT2G42820 235 / 1e-80 HVA22-like protein F (.1) Potri.015G099700 [exp] 90 / 6e-23 AT5G50720 166 / 5e-54 ARABIDOPSIS THALIANA HVA22 HOMOLOGUE E, HVA22 homologue E (.1) Potri.012G101600 [exp] 89 / 6e-23 AT5G50720 133 / 3e-41 ARABIDOPSIS THALIANA HVA22 HOMOLOGUE E, HVA22 homologue E (.1) Potri.009G078500 [exp] 93 / 4e-22 AT1G74520 104 / 6e-26 HVA22 homologue A (.1) Potri.014G148600 [exp] 86 / 2e-21 AT5G62490 87 / 1e-22 ARABIDOPSIS THALIANA HVA22 HOMOLOGUE B, HVA22 homologue B (.1) Potri.017G139000 [exp] 87 / 3e-20 AT1G74520 119 / 5e-32 HVA22 homologue A (.1) Potri.001G283000 [exp] 84 / 4e-19 AT1G74520 98 / 1e-23 HVA22 homologue A (.1) Potri.005G152100 [exp] 74 / 2e-15 AT1G69700 102 / 1e-25 HVA22 homologue C (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03134 [flax] [poplar] TB2_DP1_HVA22 TB2/DP1, HVA22 family
Representative CDS sequence Show only first row Show all	>Lus10037191 pacid=23152382 polypeptide=Lus10037191 locus=Lus10037191.g ID=Lus10037191.BGIv1.0 annot-version=v1.0 ATGGCTAATGGCTCTGGAAACTTCATTCAAGTTGTAGCCAAGAACTTCGACGTCCTTGCCCTGCCTTTGGTTACCCTGCTTTACCCATTGTATGCTTCGA TAAGGGCTATCGAGACCAAGTCGAGGACCGATGACCAGCAGTGGCTCACTTATTGGGTGCTCTACTCCATGATCACCCTCTTCGAGCTCACTTTCGCCAA GATCCTCGAATGCATTCCAGTGTGGCCATATGCCAAGCTAATCCTGAGCTGTTGGCTAGTATTGCCACACTTCAACGGAGCAGCGCACGTCTACAAACAC TTCATAAGGCCCTTCTACATGAACCCTCACTCAGTGGTATCCAGCAGCACAGTCTGGTACGTCCCCAGAAAGAAGAGCATCTTCAGCCAGCCAGATGATG TCTTAACTGCTGCCGAAAGGTACATCGACGAACATGGCACCGAAGCTTTCGAACGCATGATCATCAACAAGACTCAGAGAGGGGAAAGAAGCAGTAACAA CCACAACAGGAGGAGCGATGCTTACATGGTTAACAACAGTTACTTGAGTAACAACTACGCGATTTTCGATGATGATTATCGATACTAA
AA sequence Show only first row Show all	>Lus10037191 pacid=23152382 polypeptide=Lus10037191 locus=Lus10037191.g ID=Lus10037191.BGIv1.0 annot-version=v1.0 MANGSGNFIQVVAKNFDVLALPLVTLLYPLYASIRAIETKSRTDDQQWLTYWVLYSMITLFELTFAKILECIPVWPYAKLILSCWLVLPHFNGAAHVYKH FIRPFYMNPHSVVSSSTVWYVPRKKSIFSQPDDVLTAAERYIDEHGTEAFERMIINKTQRGERSSNNHNRRSDAYMVNNSYLSNNYAIFDDDYRY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69700		ATHVA22C	HVA22 homologue C (.1)		Lus10037191 [exp]	0	1
AT2G46570		LAC6	laccase 6 (.1)		Lus10005976 [exp]	2.4	0.8195
AT3G54570			Plant calmodulin-binding prote...		Lus10039544 [exp]	5.7	0.7645
AT5G08350			GRAM domain-containing protein...		Lus10013445 [exp]	5.7	0.8075
AT1G73850			Protein of unknown function (D...		Lus10027226 [exp]	7.1	0.7998
AT3G13000			Protein of unknown function, D...		Lus10034787 [exp]	7.1	0.7846
AT3G11920			glutaredoxin-related (.1)		Lus10034196 [exp]	12.0	0.7312
AT5G08350			GRAM domain-containing protein...		Lus10040999 [exp]	12.2	0.7858
AT4G18340			Glycosyl hydrolase superfamily...		Lus10038501 [exp]	15.1	0.7819
AT3G47620	TCP	AtTCP14, TCP14	"TEOSINTE BRANCHED, cycloidea ...		Lus10008621 [exp]	15.7	0.7075
AT4G16195			Plant self-incompatibility pro...		Lus10017929 [exp]	17.4	0.7249

Compare expression of checked genes

Lus10037191 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.