Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69710 883 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G12350 790 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G19420 763 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) AT5G42140 651 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT4G14368 621 / 0 Regulator of chromosome condensation (RCC1) family protein (.1) AT1G76950 620 / 0 PRAF1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT3G23270 588 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT3G47660 583 / 0 Regulator of chromosome condensation (RCC1) family protein (.1) AT1G65920 488 / 7e-156 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G63860 151 / 4e-39 UVR8 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036737 [exp] 1694 / 0 AT1G69710 974 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10036030 [exp] 852 / 0 AT5G19420 1644 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10009701 [exp] 767 / 0 AT5G19420 1567 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10039525 [exp] 750 / 0 AT5G19420 1245 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10024157 [exp] 734 / 0 AT5G19420 1279 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10042800 [exp] 647 / 0 AT5G42140 1461 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10018904 [exp] 641 / 0 AT1G76950 1520 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10028600 [exp] 632 / 0 AT1G76950 1516 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10029772 [exp] 603 / 0 AT5G42140 1463 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G071800 [exp] 853 / 0 AT5G19420 1610 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.001G276900 [exp] 827 / 0 AT5G19420 1483 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.001G026900 [exp] 720 / 0 AT5G19420 1281 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.003G197600 [exp] 706 / 0 AT5G19420 1292 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.T124906 [exp] 704 / 0 AT5G19420 1292 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.002G070300 [exp] 696 / 0 AT5G42140 1422 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.005G190000 [exp] 654 / 0 AT5G42140 1407 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.008G167500 [exp] 629 / 0 AT4G14368 1266 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.004G080900 [exp] 574 / 0 AT1G65920 940 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.017G139600 [exp] 568 / 0 AT1G65920 937 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF01363 [flax] [poplar] FYVE FYVE zinc finger CL0390 [flax] [poplar] PF08381 [flax] [poplar] BRX Transcription factor regulating root and shoot growth via Pin3 CL0186 [flax] [poplar] Beta_propeller PF00415 [flax] [poplar] RCC1 Regulator of chromosome condensation (RCC1) repeat
Representative CDS sequence Show only first row Show all	>Lus10037192 pacid=23152274 polypeptide=Lus10037192 locus=Lus10037192.g ID=Lus10037192.BGIv1.0 annot-version=v1.0 ATGGCTGATTCTCACAGAGTTGGTCTTGGCGAGAGAGACATCGACCAGGCCATTACAGCACTTAAGAAAGGATCCTACTTGCTCAAATATGGCCGAAGAG GAAAGCCGAAATTCTGCCCCTTTCAACTTTCAAGTGATGATTCTGCTTTGATATGGTACTCGGGGAAAGATGAGAAGTCAATCAAACTCAACCAAGTCAC CAAGATCATTCCAGGACAGCGAACAGCAATATTCCAGCGCTATCCTCGTCCAGAGAAGGAGTATCAGTCATTTTCTCTGATATATGGTGATAGATCCTTA GATTTGATATGTAAAGACAAGGATGAAGCTGATGTCTGGTTTGTTGGTCTCGAGGCATTAATCTCTCATGGAAATTACAACAGGAAATGGAGGATTGACA CGAGAAGTGAGAGCGCGCCATCAGAGAGTCCATATTCACATACTCGAAGAAACTCTCCATCCATCACACCATTCGACTTAGAGCCAGCAGAAGGTCAAGA TCAATCATTATTAGACTTCGAAGGAAATCCACCAAACAGAATAATAGGGAAGGCGTTCTCCGATATCGTGTCGTATACTGTTTCGATCAACAACCGTCCA AACTCAGGAGCAGAGTGTTCCATCAGTACTCTTAGTGATCATAACCCTAGTGGTCGTAGCTCGACTACAGAGACATTTAGAGTCAGCTTATCTAGTGCTT TAAGCTCATCGAGCCATGGATCGTGCCACGATGATTTTGATGCTTTAGGTGATGTCTTCATATGGGGAGAAGGCAGTGCTGATGGAGCATTAGGTGGTGG TGGAGGAATCGGAAATCAATCTACCGGTTCGAAATCGGATGCCTTGCTACCCAAGGCATTGGAGTCGACCGTTGTTCTTGATGTCTATCGGATCGCATGT GGTGGAAACCATGCCGCGTTGGTCACAAGACAAGGGGAGATCTTTACATGGGGGGAAGGGCTAGGTGGCAGGCTCGGACATGGAAAAGATGTAAATGCCC CTTACCCGAAGCTAGTACATAGCATGAGTGGTATGAATGTAGATGTAGTGGCTTGTGGAGTGTACCACACTTGTGCTGTAACGATGTCCGGGGATCTCTA CACATGGGGAGATGGAGGAGGAAGTGAAGTGAGCCACTGGATCCCAAAACGGGTCACTCGTAACATCGAGGGAATCCATGTCTCAAATGTCTCGTGTGGA CCATGGCATACAGCTGCAGTCACGAGTAACGGCCAGCTTTTCACGTTCGGAGATGGGACTCTAGGGACATTAGGTCACGGGGATCGTTCCAGTACTATTG TTCCTCGAGAAGTCGAGTCGCTCAGAGGGCTGTGGACGAAAAGGGTTGCGTGTGGCTTGTGGCATACAGCAGCAGTTGCTGAGGAGGAGGTGAGTGATCC TGTGAATCCAGAAGTAGTGATCTCATTTGGGAAACTATTCACTTGGGGGAGTGGAGATGATGGATGCCTTGGACATGGCGACGAAGAATCAAAACTCGTC CCTCAACAAGTAGTTGCTTTAGTCGATGAAAACGTCTCCCAAGTAGGTTGTGGACATAACTTTACGGTGGTTTTGACCGCATCGGGACGAGTTTACACCA TGGGAAGCGACACCTATGGACAGCTCGGATGTCCGAAATCGGAGGATGCAAAGGTTCCGAATCTCGTGAAAGGTAAGCTATCAGACTGTACTGTGGAAGA TGTCACCTGTGGTGCTTACCATGTTGCGGTTCTGACATCGAAATCTGAGGTGTACACTTGGGGAAGAGGTTCTAACGGGCAGTTGGGACACGGAGACAAA GAAAGCAGAAACACGCCTAAACTAGTCGATTTCTTGCGGAGCAAGCAAGTGAAGACCGTAGTATGTGGATCCAATTTCACAGCTATTGTGTATCTCCACA AATGGGTAGGCAGCGGGGACCATTCTCTATGCACTGGATGTCGAAACCAGTTCGGGTTTCGTAGAAAGCGCCACAACTGCTACAACTGCGGGTTGGTCTT CTGCAAAACTTGCAGCGCAAGGAAGTCCCTGAAGGCCTCTCTGGCTCCGAACACCAACAAACCCTATCGAGTCTGCGATGATTGTTTCCACAAACTGAAG AAGGTGTTGGATTCGATGGTGTCTTTGCCAAAACTTGTTCCTCAAGGTAGAACCCTAAGTTGCCGCCCCATTAGAAGCATGGACTTTGCAGATAGGGAGA CAATACTGCCTAGGCTGTTGTCACAGTACTCTAGACTTTCGACTCCTGACACGATTCCGGATCCATGGCACTCGAAGCGTCATAATAATACAAAAGGCCG ACCGGGGATGCATAACAACCGTGTGTTTCCTACTGTAACGGGGAACTTGCAGTCTGTTGGATTCAGTACGCTTCTTAAAGTGCCTACTGTTACTCAAGTA AGCTTGCGGAAGCCCTCACCGAGGCACTCGCCATCTTCGAGTATCGGTCTGAGGTCATCCGGTAGTCTTGATGACACAAGGAGTATGAATGGAGCAAGGT CTTCGGTGGAAGAAATCCATAGTCTAAGGGCGCGGTTAGAAAATCTTACTCGGAGAAACCAACGTCTCGAATCCGAACTGGAAAGGAAATTGAAGCAACT AAAACAGGTTAAATCCCTGGCTGCTGATGAGGCTGAGAAGTGCAAATCAGCCAAGGAAGTCATCAAGTCCCTTACTTGTCAGGCAAGTTTTAACAAACCA AACCATTATATAATCTTACTCAAACCGGATAATCTAGTTTCGTTCTTAATAACGGGTCTCTGTTTTTCGGTTACGCAGTTGAAAGATATGGCCCAACGAT CCCCTCATGCGGAACAAGCTAGCTCAAGCCGGAGTTCCCAAGAACTACTACCCGGTGCTAGTGAACTGTCTCAGGAAATTGAACCGAATGGAAACTCGGC AGACAACCACATGCTGACATATGGTCCGAAAAACCAATCCAAAAAGCTGCAGCATGTTGTACAGGCTGAACCAGGTGTGTTCATAACTCTTTCATCTTTA CCAACCGGTGGCAACGAGCTCAAGCGAGTTCGATTCAGCCGGAAGTACTTCTCGGAGGAAGAAGCTGAGAGGTGGTGGGAAGAAAAAGGGACCAAGTTTT GTGAGCGTTACAACATAGATACTGACTGA
AA sequence Show only first row Show all	>Lus10037192 pacid=23152274 polypeptide=Lus10037192 locus=Lus10037192.g ID=Lus10037192.BGIv1.0 annot-version=v1.0 MADSHRVGLGERDIDQAITALKKGSYLLKYGRRGKPKFCPFQLSSDDSALIWYSGKDEKSIKLNQVTKIIPGQRTAIFQRYPRPEKEYQSFSLIYGDRSL DLICKDKDEADVWFVGLEALISHGNYNRKWRIDTRSESAPSESPYSHTRRNSPSITPFDLEPAEGQDQSLLDFEGNPPNRIIGKAFSDIVSYTVSINNRP NSGAECSISTLSDHNPSGRSSTTETFRVSLSSALSSSSHGSCHDDFDALGDVFIWGEGSADGALGGGGGIGNQSTGSKSDALLPKALESTVVLDVYRIAC GGNHAALVTRQGEIFTWGEGLGGRLGHGKDVNAPYPKLVHSMSGMNVDVVACGVYHTCAVTMSGDLYTWGDGGGSEVSHWIPKRVTRNIEGIHVSNVSCG PWHTAAVTSNGQLFTFGDGTLGTLGHGDRSSTIVPREVESLRGLWTKRVACGLWHTAAVAEEEVSDPVNPEVVISFGKLFTWGSGDDGCLGHGDEESKLV PQQVVALVDENVSQVGCGHNFTVVLTASGRVYTMGSDTYGQLGCPKSEDAKVPNLVKGKLSDCTVEDVTCGAYHVAVLTSKSEVYTWGRGSNGQLGHGDK ESRNTPKLVDFLRSKQVKTVVCGSNFTAIVYLHKWVGSGDHSLCTGCRNQFGFRRKRHNCYNCGLVFCKTCSARKSLKASLAPNTNKPYRVCDDCFHKLK KVLDSMVSLPKLVPQGRTLSCRPIRSMDFADRETILPRLLSQYSRLSTPDTIPDPWHSKRHNNTKGRPGMHNNRVFPTVTGNLQSVGFSTLLKVPTVTQV SLRKPSPRHSPSSSIGLRSSGSLDDTRSMNGARSSVEEIHSLRARLENLTRRNQRLESELERKLKQLKQVKSLAADEAEKCKSAKEVIKSLTCQASFNKP NHYIILLKPDNLVSFLITGLCFSVTQLKDMAQRSPHAEQASSSRSSQELLPGASELSQEIEPNGNSADNHMLTYGPKNQSKKLQHVVQAEPGVFITLSSL PTGGNELKRVRFSRKYFSEEEAERWWEEKGTKFCERYNIDTD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69710			Regulator of chromosome conden...		Lus10037192 [exp]	0	1
AT5G36930			Disease resistance protein (TI...		Lus10018616 [exp]	1.4	0.9090
AT2G02450	NAC	LOV1, ANAC034, ...	LONG VEGETATIVE PHASE 1, Arabi...		Lus10003367 [exp]	2.8	0.8732
AT5G25330			Core-2/I-branching beta-1,6-N-...		Lus10002919 [exp]	3.2	0.8769
AT1G53140		DRP5A	Dynamin related protein 5A (.1...		Lus10008749 [exp]	6.1	0.8531
AT5G44785		OSB3	organellar single-stranded DNA...		Lus10002722 [exp]	8.9	0.8489
AT3G57430		OTP84	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10038400 [exp]	9.2	0.8897
					Lus10039807 [exp]	12.0	0.8447
AT3G53700		MEE40	maternal effect embryo arrest ...		Lus10012328 [exp]	16.2	0.8875
AT3G10840			alpha/beta-Hydrolases superfam...		Lus10028989 [exp]	16.4	0.8676
AT3G06430		AtPPR2, EMB2750	pentatricopeptide repeat 2, em...		Lus10000862 [exp]	20.1	0.8834

Compare expression of checked genes

Lus10037192 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.