Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26900 202 / 2e-62 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G15130 160 / 5e-46 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G02980 157 / 3e-45 OTP85 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G66520 154 / 3e-44 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G14820 150 / 1e-42 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G48910 148 / 5e-42 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G50270 147 / 1e-41 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G33170 147 / 2e-41 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G20730 145 / 5e-41 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G18970 142 / 2e-40 MEF20 mitochondrial editing factor 20 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036736 [exp] 300 / 4e-100 AT1G26900 574 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031423 [exp] 162 / 4e-47 AT5G66520 538 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010909 [exp] 159 / 8e-46 AT5G66520 537 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014298 [exp] 158 / 2e-45 AT5G66520 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029344 [exp] 155 / 1e-44 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026006 [exp] 155 / 2e-44 AT5G66520 746 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024971 [exp] 154 / 5e-44 AT4G37380 772 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10036029 [exp] 152 / 8e-44 AT5G27110 577 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010385 [exp] 152 / 3e-43 AT4G37380 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G012600 [exp] 178 / 8e-53 AT2G29760 540 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G223900 [exp] 160 / 5e-47 AT5G56310 508 / 1e-176 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G168800 [exp] 160 / 1e-46 AT2G02980 860 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G466066 [exp] 157 / 5e-45 AT4G33990 1067 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G065500 [exp] 156 / 5e-45 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G050200 [exp] 153 / 8e-44 AT4G37380 817 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G077700 [exp] 152 / 1e-43 AT4G30700 489 / 1e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G044700 [exp] 153 / 3e-43 AT3G22690 582 / 0.0 unknown protein Potri.015G034900 [exp] 149 / 4e-43 AT4G21065 370 / 2e-122 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.003G006800 [exp] 152 / 5e-43 AT3G16610 687 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10037193 pacid=23152267 polypeptide=Lus10037193 locus=Lus10037193.g ID=Lus10037193.BGIv1.0 annot-version=v1.0 ATGACACTCGATGCGGTTCTCGGTACAGCTTTGATCGATATGTTTTCGAAATCAGGGTTTCTCGACAAGGCTATCGGCATCTTTGAGAGAATGGTGAGCA AAGATGTCAAGTCATGGAATGCTATGATCATAGGCTATGGAGTTCACGGCCGGTCGAGGGAAGCTCTTGCGCTCTTGTACAGAATGGAGGGGGAACGATT CGTTCCGAACGAAGTCACGTTCTTGGCTCTGCTAAGTGCTTGCAGCCACGATGGGATGGTGGCCAAAGCAATGGAGTGTTTCAGGAGGATGGTTGAACGT TACGGTATGGTACCGAAGGTGGAGCATTACGGGTGCATTACCGATTTGTTAGGTCGTGCAGGGTTACTGAAGGAAGCAAGAGGGCTGATCGAGAGTCTGC CGGTGATCAACAGCAATGCCACTGCTAGGCGTGCATTGCTTGCGGCGTGCAGAGTGCATGGAGATGTTGAGTTAGGGGAAAAGGTGAAGAGAGTGTTGGT TGAAATGGACGATCGACATCCTACGGACTAG
AA sequence Show only first row Show all	>Lus10037193 pacid=23152267 polypeptide=Lus10037193 locus=Lus10037193.g ID=Lus10037193.BGIv1.0 annot-version=v1.0 MTLDAVLGTALIDMFSKSGFLDKAIGIFERMVSKDVKSWNAMIIGYGVHGRSREALALLYRMEGERFVPNEVTFLALLSACSHDGMVAKAMECFRRMVER YGMVPKVEHYGCITDLLGRAGLLKEARGLIESLPVINSNATARRALLAACRVHGDVELGEKVKRVLVEMDDRHPTD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26900			Pentatricopeptide repeat (PPR)...		Lus10037193 [exp]	0	1
AT5G14100		ABCI11, ATNAP14	ARABIDOPSIS THALIANANON-INTRIN...		Lus10032025 [exp]	13.2	0.7910
AT3G25060			Tetratricopeptide repeat (TPR)...		Lus10025915 [exp]	14.6	0.7738
AT1G49880		EMB3106, AtErv1...	EMBRYO DEFECTIVE 3106, Erv1/Al...		Lus10011421 [exp]	18.7	0.7610
AT5G64816			unknown protein		Lus10009081 [exp]	21.8	0.7907
AT2G42680		MBF1A, ATMBF1A	ARABIDOPSIS THALIANA MULTIPROT...		Lus10000056 [exp]	26.3	0.7844
AT1G68560		AXY3, TRG1, XYL...	thermoinhibition resistant ger...		Lus10021679 [exp]	42.8	0.7509
AT5G06240		EMB2735	embryo defective 2735 (.1)		Lus10021327 [exp]	44.7	0.7326
AT1G29990		PFD6, PDF6	prefoldin 6 (.1)		Lus10023313 [exp]	54.7	0.7456
AT4G38495			unknown protein		Lus10029400 [exp]	58.7	0.7294
AT4G00530			unknown protein		Lus10037854 [exp]	64.5	0.7371

Compare expression of checked genes

Lus10037193 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.