Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26900 110 / 9e-29 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G11290 97 / 4e-24 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G57430 87 / 2e-20 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G39350 87 / 3e-20 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G53360 86 / 4e-20 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G20770 86 / 6e-20 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G51320 86 / 7e-20 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G23330 85 / 1e-19 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29760 84 / 3e-19 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G55740 84 / 3e-19 CRR21 chlororespiratory reduction 21, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036736 [exp] 265 / 9e-87 AT1G26900 574 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008136 [exp] 89 / 4e-21 AT5G39350 639 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10016509 [exp] 87 / 3e-20 AT1G11290 361 / 1e-114 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10040776 [exp] 87 / 3e-20 AT1G11290 272 / 7e-82 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038138 [exp] 86 / 4e-20 AT4G39952 793 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10028855 [exp] 86 / 6e-20 AT4G21300 873 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10025915 [exp] 84 / 3e-19 AT3G25060 627 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020138 [exp] 81 / 3e-19 AT3G58590 164 / 1e-46 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010688 [exp] 83 / 5e-19 AT4G39952 637 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G178200 [exp] 91 / 1e-21 AT4G35130 919 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G035100 [exp] 90 / 2e-21 AT4G13650 397 / 8e-126 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G067000 [exp] 90 / 3e-21 AT1G18485 500 / 8e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G029500 [exp] 88 / 7e-21 AT2G04860 778 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G048800 [exp] 88 / 8e-21 AT4G02750 1099 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G205900 [exp] 87 / 3e-20 AT2G17210 737 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G059400 [exp] 85 / 1e-19 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G074000 [exp] 84 / 2e-19 AT4G39952 892 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G191000 [exp] 83 / 5e-19 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G044700 [exp] 83 / 5e-19 AT3G22690 582 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10037194 pacid=23152546 polypeptide=Lus10037194 locus=Lus10037194.g ID=Lus10037194.BGIv1.0 annot-version=v1.0 ATGCTCGAGAGGAATGATTGGGTCTCGTGGAACATTTTGATGGTAGCTTCTCCGCCGGATATGGCCATGGGATTGTTCAAGGAGATGTTAAGACGCTGTG AAGGTGTCAGTGAGGCTACATTGTTGACTGTCCTGTCGAGTTTCTTCCGGTCGGAGGATTCACTTGGAGGTAAGTCCATCCATGGCTATTACATCAAAAC CGGGTTATCCTCGAAAGTTAATATCGCGACTGCTCTTGTCGAAATGTACGCTAAAACCGGTAGTTTAGATTCAGGGCGTAGGGTTTTTGACGGGACCATA GCTAGGGACGTTGTGCTATGGAATTGTATGATACATTCCTATGCCAAAGCTGGACTAATAGATGAAGGAATAGCTTTGCTTAAACTGATGAAAGATGAAC AAGTGAAGCCAAATTCGTCAACATTAGCAAGTCTTTTTCATCTTGTTCCGCCAATGGATCCATCAAGCTCGGAAAATATCTAA
AA sequence Show only first row Show all	>Lus10037194 pacid=23152546 polypeptide=Lus10037194 locus=Lus10037194.g ID=Lus10037194.BGIv1.0 annot-version=v1.0 MLERNDWVSWNILMVASPPDMAMGLFKEMLRRCEGVSEATLLTVLSSFFRSEDSLGGKSIHGYYIKTGLSSKVNIATALVEMYAKTGSLDSGRRVFDGTI ARDVVLWNCMIHSYAKAGLIDEGIALLKLMKDEQVKPNSSTLASLFHLVPPMDPSSSENI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26900			Pentatricopeptide repeat (PPR)...		Lus10037194 [exp]	0	1
AT2G40860			protein kinase family protein ...		Lus10024475 [exp]	35.1	0.6452
AT5G61400			Pentatricopeptide repeat (PPR)...		Lus10015716 [exp]	43.5	0.6503
AT4G32600			RING/U-box superfamily protein...		Lus10017750 [exp]	47.2	0.6532
AT5G06810			Mitochondrial transcription te...		Lus10012021 [exp]	51.6	0.6493
AT2G26790			Pentatricopeptide repeat (PPR)...		Lus10020298 [exp]	56.1	0.6175
AT2G14850			unknown protein		Lus10002120 [exp]	75.8	0.5997
AT5G62670		AHA11	H\(+\)-ATPase 11, H\(+\)-ATPas...		Lus10042183 [exp]	84.9	0.6272
					Lus10016250 [exp]	93.2	0.5698
AT1G10150		ATPP2-A10	Carbohydrate-binding protein (...		Lus10012487 [exp]	101.8	0.6220
AT4G25330			unknown protein		Lus10012314 [exp]	105.0	0.5858

Compare expression of checked genes

Lus10037194 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.