Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26920 69 / 1e-14 unknown protein AT1G69760 61 / 5e-12 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030488 [exp] 90 / 7e-23 AT1G26920 94 / 2e-24 unknown protein Lus10012840 [exp] 77 / 4e-18 AT1G26920 92 / 1e-23 unknown protein
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037195 pacid=23152615 polypeptide=Lus10037195 locus=Lus10037195.g ID=Lus10037195.BGIv1.0 annot-version=v1.0 ATGGCCGATTTGAAGCGGCAGCGACCGGACCACTCCGGCGAATCCGACGCCTCCGCCGATGATAGCAACAACAAACGCCAAAAGCCCTCTTACAACCAAA TCCTCTCCTTCCTCGACGAAGAAACCGAGGAGCCGGACCACGACTTCTCATCCCTCCTCACTTCCCTCCAGGATGAGCTTTCCTCAGATCTCGCCGCTGG AAATCTCGATTCATCCGCCGCAGCGGCGGCGTCGGCGGCAACCACCACGGTGGACGACTACGCCTGCTGCTCGTCTTCCTCGTCTTCCTCCTCATCGGAG GTGAAGGACGAGGAGGACGAGAAGGAGCGAGTCATCCGGCACCTTCTGGAGGCGTCAGACGACGAGCTCGGCATCCCGACGGCGGCGGAAGGTGACGTTG CCGGCGATGATTTTTTCACGGCGGTGGATTCGGTGGAGGGTTACGCGAATTGGAATGGATTGTGGGAGTTTGAGGATGCGAATGCGAACTATTACACGAT GCTGCAGTCTGAACTGTTCATGTAG
AA sequence Show only first row Show all	>Lus10037195 pacid=23152615 polypeptide=Lus10037195 locus=Lus10037195.g ID=Lus10037195.BGIv1.0 annot-version=v1.0 MADLKRQRPDHSGESDASADDSNNKRQKPSYNQILSFLDEETEEPDHDFSSLLTSLQDELSSDLAAGNLDSSAAAAASAATTTVDDYACCSSSSSSSSSE VKDEEDEKERVIRHLLEASDDELGIPTAAEGDVAGDDFFTAVDSVEGYANWNGLWEFEDANANYYTMLQSELFM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26920			unknown protein		Lus10037195 [exp]	0	1
AT2G29700		ATPH1	pleckstrin homologue 1 (.1)		Lus10040681 [exp]	5.7	0.8189
AT1G20823			RING/U-box superfamily protein...		Lus10030728 [exp]	5.7	0.8352
AT4G14740			Plant protein of unknown funct...		Lus10039370 [exp]	5.9	0.8470
AT3G61180			RING/U-box superfamily protein...		Lus10041359 [exp]	11.9	0.8325
AT1G55365			unknown protein		Lus10010316 [exp]	12.0	0.7688
AT4G33550			Bifunctional inhibitor/lipid-t...		Lus10005011 [exp]	12.1	0.7575
AT1G49230			RING/U-box superfamily protein...		Lus10006785 [exp]	18.2	0.8130
AT5G51810		AT2353, GA20OX2...	gibberellin 20 oxidase 2 (.1)		Lus10038894 [exp]	19.0	0.7628
AT3G04730	AUX_IAA	IAA16	indoleacetic acid-induced prot...		Lus10015907 [exp]	21.4	0.7930
AT3G23880			F-box and associated interacti...		Lus10023238 [exp]	23.8	0.8180

Compare expression of checked genes

Lus10037195 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.